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LOC103178621 ETS-related transcription factor Elf-1 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103178621, updated on 7-Dec-2023

Summary

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Gene symbol
LOC103178621
Gene description
ETS-related transcription factor Elf-1
See related
Ensembl:ENSCMIG00000005243
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
elf1
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704745.1 (27811596..27889953)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890082.1 (2453493..2529938, complement)

NW_024704745.1Genomic Context describing neighboring genes Neighboring gene arginine and glutamate-rich protein 1 Neighboring gene transmembrane protein FAM155A Neighboring gene SGT1 homolog, MIS12 kinetochore complex assembly cochaperone Neighboring gene chondromodulin

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ETS-related transcription factor Elf-1
Names
E74 like ETS transcription factor 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704745.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    27811596..27889953
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007893460.2 → XP_007891651.2  ETS-related transcription factor Elf-1 isoform X1

    UniProtKB/TrEMBL
    V9KC83
    Conserved Domains (2) summary
    smart00413
    Location:209 → 291
    ETS; erythroblast transformation specific domain
    COG5028
    Location:337 → 502
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

  2. XM_007893459.2 → XP_007891650.2  ETS-related transcription factor Elf-1 isoform X1

    UniProtKB/TrEMBL
    V9KC83
    Conserved Domains (2) summary
    smart00413
    Location:209 → 291
    ETS; erythroblast transformation specific domain
    COG5028
    Location:337 → 502
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

  3. XM_007893462.2 → XP_007891653.2  ETS-related transcription factor Elf-1 isoform X1

    UniProtKB/TrEMBL
    V9KC83
    Conserved Domains (2) summary
    smart00413
    Location:209 → 291
    ETS; erythroblast transformation specific domain
    COG5028
    Location:337 → 502
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

  4. XM_042333943.1 → XP_042189877.1  ETS-related transcription factor Elf-1 isoform X2

    UniProtKB/TrEMBL
    V9KJP4
    Conserved Domains (2) summary
    smart00413
    Location:146 → 228
    ETS; erythroblast transformation specific domain
    COG5028
    Location:274 → 439
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

  5. XM_042333944.1 → XP_042189878.1  ETS-related transcription factor Elf-1 isoform X3

    UniProtKB/TrEMBL
    A0A4W3HKH2
    Conserved Domains (2) summary
    smart00413
    Location:117 → 199
    ETS; erythroblast transformation specific domain
    COG5028
    Location:245 → 410
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]

  6. XM_007893465.2 → XP_007891656.2  ETS-related transcription factor Elf-1 isoform X3

    UniProtKB/TrEMBL
    A0A4W3HKH2
    Conserved Domains (2) summary
    smart00413
    Location:117 → 199
    ETS; erythroblast transformation specific domain
    COG5028
    Location:245 → 410
    COG5028; Vesicle coat complex COPII, subunit SEC24/subunit SFB2/subunit SFB3 [Intracellular trafficking and secretion]
Nucleotide Protein
Heading Accession and Version

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