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trappc13 trafficking protein particle complex subunit 13 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103177789, updated on 11-Mar-2024

Summary

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Gene symbol
trappc13
Gene description
trafficking protein particle complex subunit 13
See related
Ensembl:ENSCMIG00000019007
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
13
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704742.1 (120169756..120195921, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890075.1 (2160531..2186848, complement)

NW_024704742.1Genomic Context describing neighboring genes Neighboring gene erbb2 interacting protein Neighboring gene uncharacterized LOC103177786 Neighboring gene transfer RNA threonine (anticodon UGU) Neighboring gene transfer RNA leucine (anticodon UAG) Neighboring gene tripartite motif containing 23 Neighboring gene peptidylprolyl isomerase domain and WD repeat containing 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Component Evidence Code Pubs
part_of TRAPPIII protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trafficking protein particle complex subunit 13
Names
trafficking protein particle complex 13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704742.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    120169756..120195921 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007892121.2 → XP_007890312.1  trafficking protein particle complex subunit 13 isoform X4

    UniProtKB/TrEMBL
    V9KZD1
    Related
    ENSCMIP00000046234.1
    Conserved Domains (1) summary
    pfam06159
    Location:65 → 291
    DUF974; Protein of unknown function (DUF974)

  2. XM_007892119.2 → XP_007890310.1  trafficking protein particle complex subunit 13 isoform X3

    UniProtKB/TrEMBL
    A0A4W3K503, V9KZD1
    Related
    ENSCMIP00000046228.1
    Conserved Domains (2) summary
    pfam00927
    Location:302 → 377
    Transglut_C; Transglutaminase family, C-terminal ig like domain
    pfam06159
    Location:65 → 291
    DUF974; Protein of unknown function (DUF974)

  3. XM_007892118.2 → XP_007890309.1  trafficking protein particle complex subunit 13 isoform X2

    UniProtKB/TrEMBL
    V9KZD1
    Conserved Domains (1) summary
    pfam06159
    Location:65 → 297
    DUF974; Protein of unknown function (DUF974)

  4. XM_007892117.2 → XP_007890308.1  trafficking protein particle complex subunit 13 isoform X1

    UniProtKB/TrEMBL
    A0A4W3JTY0, V9KZD1
    Related
    ENSCMIP00000046227.1
    Conserved Domains (2) summary
    pfam00927
    Location:308 → 383
    Transglut_C; Transglutaminase family, C-terminal ig like domain
    pfam06159
    Location:65 → 297
    DUF974; Protein of unknown function (DUF974)
Nucleotide Protein
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