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pcdh7b protocadherin 7b [ Callorhinchus milii (elephant shark) ]

Gene ID: 103175842, updated on 11-Mar-2024

Summary

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Gene symbol
pcdh7b
Gene description
protocadherin 7b
See related
Ensembl:ENSCMIG00000011164
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Also known as
pcdh7
Orthologs
human zebrafish all
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Genomic context

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See pcdh7b in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704742.1 (45340503..45553995)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890064.1 (7567156..7781204)

NW_024704742.1Genomic Context describing neighboring genes Neighboring gene stromal interaction molecule 2b Neighboring gene transfer RNA glycine (anticodon UCC) Neighboring gene transfer RNA alanine (anticodon AGC) Neighboring gene ArfGAP with RhoGAP domain, ankyrin repeat and PH domain 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables calcium ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in homophilic cell adhesion via plasma membrane adhesion molecules IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
protocadherin-7b
Names
protocadherin 7

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704742.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    45340503..45553995
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042341224.1 → XP_042197158.1  protocadherin-7b isoform X2

    UniProtKB/TrEMBL
    A0A4W3ID30
    Conserved Domains (1) summary
    cd11304
    Location:621 → 715
    Cadherin_repeat; Cadherin tandem repeat domain

  2. XM_042341217.1 → XP_042197151.1  protocadherin-7b isoform X1

    UniProtKB/TrEMBL
    A0A4W3ID30
    Conserved Domains (1) summary
    cd11304
    Location:630 → 724
    Cadherin_repeat; Cadherin tandem repeat domain
Nucleotide Protein
Heading Accession and Version

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