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wdfy1 WD repeat and FYVE domain containing 1 [ Callorhinchus milii (elephant shark) ]

Gene ID: 103175353, updated on 11-Mar-2024

Summary

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Gene symbol
wdfy1
Gene description
WD repeat and FYVE domain containing 1
See related
Ensembl:ENSCMIG00000017898
Gene type
protein coding
RefSeq status
MODEL
Organism
Callorhinchus milii
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Holocephali; Chimaeriformes; Callorhinchidae; Callorhinchus
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current IMCB_Cmil_1.0 (GCF_018977255.1) Unplaced Scaffold NW_024704752.1 (16451318..16467900, complement)
100 previous assembly Callorhinchus_milii-6.1.3 (GCF_000165045.1) Unplaced Scaffold NW_006890054.1 (14713657..14730255, complement)

NW_024704752.1Genomic Context describing neighboring genes Neighboring gene secretogranin II a Neighboring gene adaptor related protein complex 1 subunit sigma 3 Neighboring gene transfer RNA glutamic acid (anticodon UUC) Neighboring gene serpin peptidase inhibitor, clade E (nexin, plasminogen activator inhibitor type 1), member 2 Neighboring gene serine protease 59, putative

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Sequencing and analysis of full-length cDNAs, 5'-ESTs and 3'-ESTs from a cartilaginous fish, the elephant shark (Callorhinchus milii). Tan YY, et al. PLoS One, 2012. PMID 23056606, Free PMC Article
  2. Elephant shark genome provides unique insights into gnathostome evolution. Venkatesh B, et al. Nature, 2014 Jan 9. PMID 24402279, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metal ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
WD repeat and FYVE domain-containing protein 1
Names
WD repeat and FYVE domain-containing protein 1-like protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Callorhinchus milii Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference IMCB_Cmil_1.0 Primary Assembly

Genomic

  1. NW_024704752.1 Reference IMCB_Cmil_1.0 Primary Assembly

    Range
    16451318..16467900 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007888366.2 → XP_007886557.1  WD repeat and FYVE domain-containing protein 1

    UniProtKB/TrEMBL
    A0A4W3KCR2, V9KGE1
    Related
    ENSCMIP00000043170.1
    Conserved Domains (4) summary
    COG2319
    Location:20 → 394
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:117 → 150
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:16 → 276
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...
    cl22851
    Location:279 → 354
    PHD_SF; PHD finger superfamily
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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