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thumpd3 THUMP domain containing 3 [ Poecilia formosa (Amazon molly) ]

Gene ID: 103150693, updated on 11-Mar-2024

Summary

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Gene symbol
thumpd3
Gene description
THUMP domain containing 3
See related
Ensembl:ENSPFOG00000002318
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
12
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006800199.1 (389467..413913, complement)

NW_006800199.1Genomic Context describing neighboring genes Neighboring gene potassium voltage-gated channel subfamily B member 1 Neighboring gene retinol dehydrogenase 10-like Neighboring gene prostacyclin synthase-like Neighboring gene SLIT-ROBO Rho GTPase activating protein 3 Neighboring gene RAD18 E3 ubiquitin protein ligase

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006800199.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tRNA (guanine) methyltransferase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in tRNA methylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
THUMP domain-containing protein 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006800199.1 Reference Poecilia_formosa-5.1.2

    Range
    389467..413913 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016680876.1 → XP_016536362.1  THUMP domain-containing protein 3

    UniProtKB/TrEMBL
    A0A087X900, A0A096M120
    Conserved Domains (3) summary
    cd11715
    Location:41 → 270
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    COG0116
    Location:35 → 466
    RlmL; 23S rRNA G2445 N2-methylase RlmL [Translation, ribosomal structure and biogenesis]
    cl17173
    Location:277 → 459
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  2. XM_016680875.1 → XP_016536361.1  THUMP domain-containing protein 3

    UniProtKB/TrEMBL
    A0A087X900, A0A096M120
    Conserved Domains (3) summary
    cd11715
    Location:41 → 270
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    COG0116
    Location:35 → 466
    RlmL; 23S rRNA G2445 N2-methylase RlmL [Translation, ribosomal structure and biogenesis]
    cl17173
    Location:277 → 459
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...

  3. XM_007570407.2 → XP_007570469.1  THUMP domain-containing protein 3

    UniProtKB/TrEMBL
    A0A087X900, A0A096M120
    Related
    ENSPFOP00000002253.1, ENSPFOT00000002257.1
    Conserved Domains (3) summary
    cd11715
    Location:41 → 270
    THUMP_AdoMetMT; THUMP domain associated with S-adenosylmethionine-dependent methyltransferases
    COG0116
    Location:35 → 466
    RlmL; 23S rRNA G2445 N2-methylase RlmL [Translation, ribosomal structure and biogenesis]
    cl17173
    Location:277 → 459
    AdoMet_MTases; S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). ...
Nucleotide Protein
Heading Accession and Version

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