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nphp1 nephronophthisis 1 [ Poecilia formosa (Amazon molly) ]

Gene ID: 103137399, updated on 11-Mar-2024

Summary

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Gene symbol
nphp1
Gene description
nephronophthisis 1
See related
Ensembl:ENSPFOG00000006938
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
21
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006799979.1 (1302531..1311380, complement)

NW_006799979.1Genomic Context describing neighboring genes Neighboring gene myelin and lymphocyte protein-like Neighboring gene myelin and lymphocyte protein-like Neighboring gene uncharacterized LOC103137398 Neighboring gene pantothenate kinase 1a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006799979.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein localization involved in establishment of planar polarity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cilium IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
nephrocystin-1
Names
nephrocystin 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006799979.1 Reference Poecilia_formosa-5.1.2

    Range
    1302531..1311380 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007551120.2 → XP_007551182.1  nephrocystin-1 isoform X1

    UniProtKB/TrEMBL
    A0A087XNB3
    Related
    ENSPFOP00000007266.2, ENSPFOT00000007278.2
    Conserved Domains (1) summary
    cd11770
    Location:154 → 207
    SH3_Nephrocystin; Src Homology 3 domain of Nephrocystin (or Nephrocystin-1)

  2. XM_016671026.1 → XP_016526512.1  nephrocystin-1 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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