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usp20 ubiquitin specific peptidase 20 [ Poecilia formosa (Amazon molly) ]

Gene ID: 103135926, updated on 11-Mar-2024

Summary

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Gene symbol
usp20
Gene description
ubiquitin specific peptidase 20
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: Un
Exon count:
25
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006799967.1 (3696340..3712492, complement)

NW_006799967.1Genomic Context describing neighboring genes Neighboring gene GTPase activating Rap/RanGAP domain like 3 Neighboring gene prostaglandin E synthase Neighboring gene surfeit locus protein 1-like Neighboring gene ribosomal protein L7a

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006799967.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein deubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin carboxyl-terminal hydrolase 20

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006799967.1 Reference Poecilia_formosa-5.1.2

    Range
    3696340..3712492 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016669921.1 → XP_016525407.1  ubiquitin carboxyl-terminal hydrolase 20 isoform X1

  2. XM_016669922.1 → XP_016525408.1  ubiquitin carboxyl-terminal hydrolase 20 isoform X2

    Conserved Domains (5) summary
    smart00695
    Location:834 → 915
    DUSP; Domain in ubiquitin-specific proteases
    cd02674
    Location:467 → 707
    Peptidase_C19R; A subfamily of peptidase C19. Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyze bonds involving the carboxyl ...
    cl02553
    Location:148 → 253
    Peptidase_C19; Peptidase C19 contains ubiquitinyl hydrolases. They are intracellular peptidases that remove ubiquitin molecules from polyubiquinated peptides by cleavage of isopeptide bonds. They hydrolyse bonds involving the carboxyl group of the C-terminal Gly ...
    pfam00443
    Location:467 → 706
    UCH; Ubiquitin carboxyl-terminal hydrolase
    pfam02148
    Location:29 → 89
    zf-UBP; Zn-finger in ubiquitin-hydrolases and other protein

  3. XM_016669920.1 → XP_016525406.1  ubiquitin carboxyl-terminal hydrolase 20 isoform X1

Nucleotide Protein
Heading Accession and Version

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