U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

msh6 mutS homolog 6 (E. coli) [ Poecilia formosa (Amazon molly) ]

Gene ID: 103134110, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
msh6
Gene description
mutS homolog 6 (E. coli)
See related
Ensembl:ENSPFOG00000015401
Gene type
protein coding
RefSeq status
MODEL
Organism
Poecilia formosa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Neoteleostei; Acanthomorphata; Ovalentaria; Atherinomorphae; Cyprinodontiformes; Poeciliidae; Poeciliinae; Poecilia
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
10
Annotation release Status Assembly Chr Location
101 current Poecilia_formosa-5.1.2 (GCF_000485575.1) Unplaced Scaffold NW_006799954.1 (2759608..2767646, complement)

NW_006799954.1Genomic Context describing neighboring genes Neighboring gene forkhead box N2a Neighboring gene F-box protein 11a Neighboring gene potassium channel, subfamily K, member 12 Neighboring gene golgin A4

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006799954.1 Unplaced Scaffold Reference Poecilia_formosa-5.1.2

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mismatch repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of MutSalpha complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
DNA mismatch repair protein Msh6

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Poecilia formosa Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Poecilia_formosa-5.1.2

Genomic

  1. NW_006799954.1 Reference Poecilia_formosa-5.1.2

    Range
    2759608..2767646 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007546220.2 → XP_007546282.1  DNA mismatch repair protein Msh6

    UniProtKB/TrEMBL
    A0A087YBU9
    Related
    ENSPFOP00000015502.2, ENSPFOT00000015524.2
    Conserved Domains (7) summary
    COG0249
    Location:424 → 1376
    MutS; DNA mismatch repair ATPase MutS [Replication, recombination and repair]
    pfam01624
    Location:424 → 542
    MutS_I; MutS domain I
    pfam05188
    Location:563 → 707
    MutS_II; MutS domain II
    pfam05190
    Location:945 → 1037
    MutS_IV; MutS family domain IV
    pfam05192
    Location:754 → 898
    MutS_III; MutS domain III
    cl02554
    Location:93 → 200
    PWWP; The PWWP domain, named for a conserved Pro-Trp-Trp-Pro motif, is a small domain consisting of 100-150 amino acids. The PWWP domain is found in numerous proteins that are involved in cell division, growth and differentiation. Most PWWP-domain proteins ...
    cl21455
    Location:1106 → 1332
    P-loop_NTPase; P-loop containing Nucleoside Triphosphate Hydrolases
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.