U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

MSH5 mutS homolog 5 [ Erinaceus europaeus (western European hedgehog) ]

Gene ID: 103126268, updated on 3-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
MSH5
Gene description
mutS homolog 5
Gene type
protein coding
RefSeq status
MODEL
Organism
Erinaceus europaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See MSH5 in Genome Data Viewer
Location:
chromosome: 4
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_10 current mEriEur2.1 (GCF_950295315.1) 4 NC_080165.1 (54930008..54959506)
101 previous assembly EriEur2.0 (GCF_000296755.1) Unplaced Scaffold NW_006804941.1 (414709..443485)

Chromosome 4 - NC_080165.1Genomic Context describing neighboring genes Neighboring gene megakaryocyte and platelet inhibitory receptor G6b Neighboring gene DDAH family member 2, ADMA-independent Neighboring gene chloride intracellular channel 1 Neighboring gene suppressor APC domain containing 1 Neighboring gene von Willebrand factor A domain containing 7

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ATP-dependent DNA damage sensor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mismatched DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chiasma assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in mismatch repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
mutS protein homolog 5

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_950295315.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mEriEur2.1

Genomic

  1. NC_080165.1 Reference mEriEur2.1

    Range
    54930008..54959506
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060189470.1 → XP_060045453.1  mutS protein homolog 5 isoform X2

  2. XM_060189469.1 → XP_060045452.1  mutS protein homolog 5 isoform X1

    UniProtKB/TrEMBL
    A0A1S3AMA9

  3. XM_007537161.3 → XP_007537223.1  mutS protein homolog 5 isoform X1

    UniProtKB/TrEMBL
    A0A1S3AMA5, A0A1S3AMA9
    Conserved Domains (4) summary
    cd03281
    Location:550 → 756
    ABC_MSH5_euk; ATP-binding cassette domain of eukaryotic MutS5 homolog
    smart00533
    Location:246 → 562
    MUTSd; DNA-binding domain of DNA mismatch repair MUTS family
    pfam05192
    Location:246 → 371
    MutS_III; MutS domain III
    cl17822
    Location:391 → 488
    MutS_III; MutS domain III
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.