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ALKBH3 alkB homolog 3, alpha-ketoglutarate dependent dioxygenase [ Erinaceus europaeus (western European hedgehog) ]

Gene ID: 103121024, updated on 11-Apr-2024

Summary

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Gene symbol
ALKBH3
Gene description
alkB homolog 3, alpha-ketoglutarate dependent dioxygenase
Gene type
protein coding
RefSeq status
MODEL
Organism
Erinaceus europaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 17
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_10 current mEriEur2.1 (GCF_950295315.1) 17 NC_080178.1 (17864594..17914986, complement)
101 previous assembly EriEur2.0 (GCF_000296755.1) Unplaced Scaffold NW_006804459.1 (1317796..1367899, complement)

Chromosome 17 - NC_080178.1Genomic Context describing neighboring genes Neighboring gene 1-aminocyclopropane-1-carboxylate synthase homolog (inactive) like Neighboring gene chromosome 17 C11orf96 homolog Neighboring gene hydroxysteroid 17-beta dehydrogenase 12 Neighboring gene small nucleolar RNA SNORA58 Neighboring gene uncharacterized LOC132533863

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA alkylation repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in DNA repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
alpha-ketoglutarate-dependent dioxygenase alkB homolog 3
Names
alkB homolog 3, alpha-ketoglutaratedependent dioxygenase
alkB, alkylation repair homolog 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_950295315.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mEriEur2.1

Genomic

  1. NC_080178.1 Reference mEriEur2.1

    Range
    17864594..17914986 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_016191861.2 → XP_016047347.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X2

    UniProtKB/TrEMBL
    A0A1S3WM37
    Conserved Domains (1) summary
    cl21496
    Location:48 → 233
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  2. XM_007531514.3 → XP_007531576.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X1

    UniProtKB/TrEMBL
    A0A1S3A9I9
    Conserved Domains (1) summary
    cl21496
    Location:90 → 275
    2OG-FeII_Oxy; 2OG-Fe(II) oxygenase superfamily

  3. XM_060176567.1 → XP_060032550.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X1

    UniProtKB/TrEMBL
    A0A1S3A9I9

  4. XM_060176568.1 → XP_060032551.1  alpha-ketoglutarate-dependent dioxygenase alkB homolog 3 isoform X3

Nucleotide Protein
Heading Accession and Version

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