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SYNPO2 synaptopodin 2 [ Erinaceus europaeus (western European hedgehog) ]

Gene ID: 103115694, updated on 11-Mar-2024

Summary

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Gene symbol
SYNPO2
Gene description
synaptopodin 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Erinaceus europaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
5
Annotation release Status Assembly Chr Location
RS_2023_10 current mEriEur2.1 (GCF_950295315.1) 2 NC_080163.1 (14583072..14830067)
101 previous assembly EriEur2.0 (GCF_000296755.1) Unplaced Scaffold NW_006804193.1 (2451725..2699796)

Chromosome 2 - NC_080163.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein A1-like Neighboring gene methyltransferase 14, N6-adenosine-methyltransferase non-catalytic subunit Neighboring gene SEC24 homolog D, COPII coat complex component Neighboring gene uncharacterized LOC132536907 Neighboring gene uncharacterized LOC132536908 Neighboring gene myozenin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables actin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of actin filament bundle assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Z disc IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in actin cytoskeleton IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in stress fiber IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
synaptopodin-2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_950295315.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mEriEur2.1

Genomic

  1. NC_080163.1 Reference mEriEur2.1

    Range
    14583072..14830067
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007525487.3 → XP_007525549.1  synaptopodin-2 isoform X1

    UniProtKB/TrEMBL
    A0A1S2ZW79
    Conserved Domains (1) summary
    cd00992
    Location:7 → 85
    PDZ_signaling; PDZ domain found in a variety of Eumetazoan signaling molecules, often in tandem arrangements. May be responsible for specific protein-protein interactions, as most PDZ domains bind C-terminal polypeptides, and binding to internal (non-C-terminal) ...

  2. XM_060177092.1 → XP_060033075.1  synaptopodin-2 isoform X2

Nucleotide Protein
Heading Accession and Version

Gene LinkOut

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