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RNF170 ring finger protein 170 [ Erinaceus europaeus (western European hedgehog) ]

Gene ID: 103113222, updated on 11-Mar-2024

Summary

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Gene symbol
RNF170
Gene description
ring finger protein 170
Gene type
protein coding
RefSeq status
MODEL
Organism
Erinaceus europaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 2
Exon count:
7
Annotation release Status Assembly Chr Location
RS_2023_10 current mEriEur2.1 (GCF_950295315.1) 2 NC_080163.1 (60819592..60856275)
101 previous assembly EriEur2.0 (GCF_000296755.1) Unplaced Scaffold NW_006804109.1 (2233925..2269518)

Chromosome 2 - NC_080163.1Genomic Context describing neighboring genes Neighboring gene large ribosomal subunit protein eL38-like Neighboring gene hook microtubule tethering protein 3 Neighboring gene uncharacterized LOC132535548 Neighboring gene THAP domain containing 1 Neighboring gene cholinergic receptor nicotinic alpha 6 subunit

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF170

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_950295315.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mEriEur2.1

Genomic

  1. NC_080163.1 Reference mEriEur2.1

    Range
    60819592..60856275
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060181695.1 → XP_060037678.1  E3 ubiquitin-protein ligase RNF170 isoform X2

  2. XM_007522744.3 → XP_007522806.1  E3 ubiquitin-protein ligase RNF170 isoform X1

    UniProtKB/TrEMBL
    A0A1S2ZQ30
    Conserved Domains (2) summary
    cd00162
    Location:87 → 133
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
    pfam06803
    Location:203 → 239
    DUF1232; Protein of unknown function (DUF1232)
Nucleotide Protein
Heading Accession and Version

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