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GPBP1 GC-rich promoter binding protein 1 [ Erinaceus europaeus (western European hedgehog) ]

Gene ID: 103108047, updated on 11-Mar-2024

Summary

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Gene symbol
GPBP1
Gene description
GC-rich promoter binding protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Erinaceus europaeus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Eulipotyphla; Erinaceidae; Erinaceinae; Erinaceus
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
15
Annotation release Status Assembly Chr Location
RS_2023_10 current mEriEur2.1 (GCF_950295315.1) 5 NC_080166.1 (54405075..54455303, complement)
101 previous assembly EriEur2.0 (GCF_000296755.1) Unplaced Scaffold NW_006803986.1 (128222..195792)

Chromosome 5 - NC_080166.1Genomic Context describing neighboring genes Neighboring gene U6 spliceosomal RNA Neighboring gene actin beta like 2 Neighboring gene iron-sulfur cluster co-chaperone protein HscB-like Neighboring gene large ribosomal subunit protein eL21-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vasculin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_950295315.1-RS_2023_10

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mEriEur2.1

Genomic

  1. NC_080166.1 Reference mEriEur2.1

    Range
    54405075..54455303 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_060191323.1 → XP_060047306.1  vasculin isoform X1

    UniProtKB/TrEMBL
    A0A1S3W3Q1

  2. XM_060191321.1 → XP_060047304.1  vasculin isoform X1

    UniProtKB/TrEMBL
    A0A1S3W3Q1

  3. XM_060191320.1 → XP_060047303.1  vasculin isoform X1

    UniProtKB/TrEMBL
    A0A1S3W3Q1

  4. XM_016185476.2 → XP_016040962.1  vasculin isoform X1

    UniProtKB/TrEMBL
    A0A1S3W3Q1
    Conserved Domains (1) summary
    pfam15337
    Location:397 → 477
    Vasculin; Vascular protein family Vasculin-like 1

  5. XM_007516890.3 → XP_007516952.1  vasculin isoform X2

    UniProtKB/TrEMBL
    A0A1S2ZBS1
    Conserved Domains (1) summary
    pfam15337
    Location:377 → 457
    Vasculin; Vascular protein family Vasculin-like 1

  6. XM_060191324.1 → XP_060047307.1  vasculin isoform X3

  7. XM_060191322.1 → XP_060047305.1  vasculin isoform X1

    UniProtKB/TrEMBL
    A0A1S3W3Q1
Nucleotide Protein
Heading Accession and Version

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