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CLOCK clock circadian regulator [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103086785, updated on 11-Mar-2024

Summary

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Gene symbol
CLOCK
Gene description
clock circadian regulator
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human mouse all
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Genomic context

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See CLOCK in Genome Data Viewer
Location:
chromosome: Un
Exon count:
22
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006776097.1 (645854..736748)

NW_006776097.1Genomic Context describing neighboring genes Neighboring gene neuromedin U Neighboring gene phosducin like 2 Neighboring gene transmembrane protein 165 Neighboring gene steroid 5 alpha-reductase 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006776097 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables E-box binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in circadian regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of CLOCK-BMAL transcription complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
circadian locomoter output cycles protein kaput

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006776097.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    645854..736748
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007450264.1 → XP_007450326.1  circadian locomoter output cycles protein kaput

    UniProtKB/TrEMBL
    A0A340WNM3
    Conserved Domains (4) summary
    cd00083
    Location:32 → 86
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:275 → 373
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam13426
    Location:119 → 220
    PAS_9; PAS domain
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain

  2. XM_007450263.1 → XP_007450325.1  circadian locomoter output cycles protein kaput

    UniProtKB/TrEMBL
    A0A340WTW6
    Conserved Domains (4) summary
    cd00083
    Location:32 → 86
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cd00130
    Location:275 → 373
    PAS; PAS domain; PAS motifs appear in archaea, eubacteria and eukarya. Probably the most surprising identification of a PAS domain was that in EAG-like K+-channels. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in ...
    pfam13426
    Location:119 → 220
    PAS_9; PAS domain
    pfam14598
    Location:274 → 377
    PAS_11; PAS domain
Nucleotide Protein
Heading Accession and Version

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