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TSPAN3 tetraspanin 3 [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103084564, updated on 11-Mar-2024

Summary

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Gene symbol
TSPAN3
Gene description
tetraspanin 3
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
7
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006797029.1 (247016..272911, complement)

NW_006797029.1Genomic Context describing neighboring genes Neighboring gene reticulocalbin 2 Neighboring gene proline-serine-threonine phosphatase interacting protein 1 Neighboring gene pseudopodium enriched atypical kinase 1 Neighboring gene histone H1.0-like Neighboring gene high mobility group 20A

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006797029 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in protein localization to plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein maturation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of vascular endothelial growth factor signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
tetraspanin-3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006797029.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    247016..272911 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007469160.1 → XP_007469222.1  tetraspanin-3

    See identical proteins and their annotated locations for XP_007469222.1

    UniProtKB/TrEMBL
    A0A340Y9W4
    Conserved Domains (2) summary
    cd03163
    Location:104 → 210
    TM4SF8_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
    pfam00335
    Location:9 → 232
    Tetraspannin; Tetraspanin family

  2. XM_007469162.1 → XP_007469224.1  tetraspanin-3

    See identical proteins and their annotated locations for XP_007469224.1

    UniProtKB/TrEMBL
    A0A340YBH7
    Conserved Domains (1) summary
    cd03163
    Location:40 → 146
    TM4SF8_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...

  3. XM_007469161.1 → XP_007469223.1  tetraspanin-3

    See identical proteins and their annotated locations for XP_007469223.1

    UniProtKB/TrEMBL
    A0A340Y7S5
    Conserved Domains (1) summary
    cd03163
    Location:84 → 185
    TM4SF8_like_LEL; Tetraspanin, extracellular domain or large extracellular loop (LEL), TM4SF8_like subfamily. Tetraspanins are trans-membrane proteins with 4 trans-membrane segments. Both the N- and C-termini lie on the intracellular side of the membrane. This alignment ...
Nucleotide Protein
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