U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

TRIM41 tripartite motif containing 41 [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103083882, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
TRIM41
Gene description
tripartite motif containing 41
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
6
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006788006.1 (377693..387982, complement)

NW_006788006.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC103077284 Neighboring gene receptor for activated C kinase 1 Neighboring gene tripartite motif containing 7 Neighboring gene transfer RNA leucine (anticodon AAG)

Genomic regions, transcripts, and products

Go to the top of the page Help
Genomic Sequence:
NW_006788006 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-binding transcription factor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nuclear body IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
E3 ubiquitin-protein ligase TRIM41

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006788006.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    377693..387982 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007460953.1 → XP_007461015.1  E3 ubiquitin-protein ligase TRIM41

    UniProtKB/TrEMBL
    A0A340XPT1
    Conserved Domains (5) summary
    cd00021
    Location:225 → 262
    BBOX; B-Box-type zinc finger; zinc binding domain (CHC3H2); often present in combination with other motifs, like RING zinc finger, NHL motif, coiled-coil or RFP domain in functionally unrelated proteins, most likely mediating protein-protein interaction.
    cd13741
    Location:431 → 630
    SPRY_PRY_TRIM41; PRY/SPRY domain in tripartite motif-binding protein 41 (TRIM41)
    pfam01442
    Location:262 → 373
    Apolipoprotein; Apolipoprotein A1/A4/E domain
    cl00459
    Location:285 → 380
    MIT_CorA-like; metal ion transporter CorA-like divalent cation transporter superfamily
    cl17238
    Location:20 → 48
    RING; RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in ...
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.