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TNRC6B trinucleotide repeat containing adaptor 6B [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103081676, updated on 11-Mar-2024

Summary

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Gene symbol
TNRC6B
Gene description
trinucleotide repeat containing adaptor 6B
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human mouse all
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Genomic context

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See TNRC6B in Genome Data Viewer
Location:
chromosome: Un
Exon count:
26
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006780611.1 (8652952..8843845, complement)

NW_006780611.1Genomic Context describing neighboring genes Neighboring gene small G protein signaling modulator 3 Neighboring gene adenylosuccinate lyase Neighboring gene U3 small nucleolar ribonucleoprotein protein IMP3-like Neighboring gene family with sequence similarity 83 member F Neighboring gene GRB2 related adaptor protein 2

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006780611 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables nucleic acid binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in miRNA-mediated post-transcriptional gene silencing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of nuclear-transcribed mRNA poly(A) tail shortening IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in P-body IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
trinucleotide repeat-containing gene 6B protein
Names
trinucleotide repeat containing 6B

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006780611.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    8652952..8843845 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007453989.1 → XP_007454051.1  trinucleotide repeat-containing gene 6B protein

    UniProtKB/TrEMBL
    A0A340WYA2
    Conserved Domains (4) summary
    cd12712
    Location:1645 → 1727
    RRM_TNRC6B; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    pfam10427
    Location:944 → 1054
    Ago_hook; Argonaute hook
    pfam12938
    Location:1164 → 1341
    M_domain; M domain of GW182
    pfam16608
    Location:1358 → 1643
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  2. XM_007453990.1 → XP_007454052.1  trinucleotide repeat-containing gene 6B protein

    UniProtKB/TrEMBL
    A0A340X289
    Conserved Domains (3) summary
    cd12712
    Location:1535 → 1617
    RRM_TNRC6B; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    pfam10427
    Location:890 → 1001
    Ago_hook; Argonaute hook
    pfam16608
    Location:1248 → 1533
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  3. XM_007453992.1 → XP_007454054.1  trinucleotide repeat-containing gene 6B protein

    UniProtKB/TrEMBL
    A0A340X454
    Conserved Domains (3) summary
    cd12712
    Location:841 → 923
    RRM_TNRC6B; RNA recognition motif in vertebrate trinucleotide repeat-containing gene 6B protein (TNRC6B)
    pfam10427
    Location:197 → 307
    Ago_hook; Argonaute hook
    pfam16608
    Location:554 → 839
    TNRC6-PABC_bdg; TNRC6-PABC binding domain

  4. XM_007453991.1 → XP_007454053.1  trinucleotide repeat-containing gene 6B protein

    UniProtKB/TrEMBL
    A0A340WXH0
    Conserved Domains (3) summary
    pfam10427
    Location:858 → 968
    Ago_hook; Argonaute hook
    pfam16608
    Location:1215 → 1500
    TNRC6-PABC_bdg; TNRC6-PABC binding domain
    cl17169
    Location:1502 → 1560
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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