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ADAMTS18 ADAM metallopeptidase with thrombospondin type 1 motif 18 [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103074543, updated on 11-Mar-2024

Summary

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Gene symbol
ADAMTS18
Gene description
ADAM metallopeptidase with thrombospondin type 1 motif 18
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
23
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006771782.1 (383177..546109, complement)

NW_006771782.1Genomic Context describing neighboring genes Neighboring gene MON1 homolog B, secretory trafficking associated Neighboring gene ribosomal protein L5 pseudogene Neighboring gene nudix hydrolase 7

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006771782 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
A disintegrin and metalloproteinase with thrombospondin motifs 18

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006771782.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    383177..546109 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007447144.1 → XP_007447206.1  A disintegrin and metalloproteinase with thrombospondin motifs 18

    UniProtKB/TrEMBL
    A0A340WF03
    Conserved Domains (6) summary
    smart00209
    Location:582 → 633
    TSP1; Thrombospondin type 1 repeats
    cd04273
    Location:283 → 484
    ZnMc_ADAMTS_like; Zinc-dependent metalloprotease, ADAMTS_like subgroup. ADAMs (A Disintegrin And Metalloprotease) are glycoproteins, which play roles in cell signaling, cell fusion, and cell-cell interactions. This particular subfamily represents domain architectures that ...
    pfam01421
    Location:285 → 488
    Reprolysin; Reprolysin (M12B) family zinc metalloprotease
    pfam01562
    Location:76 → 192
    Pep_M12B_propep; Reprolysin family propeptide
    pfam05986
    Location:739 → 851
    ADAM_spacer1; ADAM-TS Spacer 1
    pfam08686
    Location:1211 → 1241
    PLAC; PLAC (protease and lacunin) domain
Nucleotide Protein
Heading Accession and Version

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