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SOHLH2 spermatogenesis and oogenesis specific basic helix-loop-helix 2 [ Lipotes vexillifer (Yangtze River dolphin) ]

Gene ID: 103071867, updated on 11-Mar-2024

Summary

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Gene symbol
SOHLH2
Gene description
spermatogenesis and oogenesis specific basic helix-loop-helix 2
Gene type
protein coding
RefSeq status
MODEL
Organism
Lipotes vexillifer
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Lipotidae; Lipotes
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
11
Annotation release Status Assembly Chr Location
100 current Lipotes_vexillifer_v1 (GCF_000442215.1) Unplaced Scaffold NW_006791240.1 (923353..963302)

NW_006791240.1Genomic Context describing neighboring genes Neighboring gene spartin Neighboring gene coiled-coil domain containing 169 Neighboring gene doublecortin like kinase 1 Neighboring gene TOM1-like protein 1-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006791240 unplaced scaffold reference Lipotes_vexillifer_v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein dimerization activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in spermatogenesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Lipotes vexillifer Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Lipotes_vexillifer_v1 Primary Assembly

Genomic

  1. NW_006791240.1 Reference Lipotes_vexillifer_v1 Primary Assembly

    Range
    923353..963302
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007464241.1 → XP_007464303.1  spermatogenesis- and oogenesis-specific basic helix-loop-helix-containing protein 2

    UniProtKB/TrEMBL
    A0A340XSM5
    Conserved Domains (2) summary
    cd00083
    Location:206 → 256
    HLH; Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long. A DNA-binding basic region is followed by two alpha-helices separated by a variable loop region; HLH forms homo- and heterodimers, ...
    cl21453
    Location:111 → 182
    PKc_like; Protein Kinases, catalytic domain
Nucleotide Protein
Heading Accession and Version

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