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PTBP1 polypyrimidine tract binding protein 1 [ Python bivittatus (Burmese python) ]

Gene ID: 103065581, updated on 11-Mar-2024

Summary

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Gene symbol
PTBP1
Gene description
polypyrimidine tract binding protein 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Python bivittatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Henophidia; Pythonidae; Python
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
15
Annotation release Status Assembly Chr Location
102 current Python_molurus_bivittatus-5.0.2 (GCF_000186305.1) Unplaced Scaffold NW_006534607.1 (10245..52671)

NW_006534607.1Genomic Context describing neighboring genes Neighboring gene phospholipid phosphatase related 3 Neighboring gene complement factor D

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006534607 Unplaced Scaffold Reference Python_molurus_bivittatus-5.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of RNA splicing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
polypyrimidine tract-binding protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Python bivittatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Python_molurus_bivittatus-5.0.2 Primary Assembly

Genomic

  1. NW_006534607.1 Reference Python_molurus_bivittatus-5.0.2 Primary Assembly

    Range
    10245..52671
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025170806.1 → XP_025026574.1  polypyrimidine tract-binding protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A9F5IKR7
    Conserved Domains (1) summary
    TIGR01649
    Location:57 → 557
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family

  2. XM_007434637.3 → XP_007434699.1  polypyrimidine tract-binding protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A9F2R3J9
    Conserved Domains (4) summary
    cd12693
    Location:81 → 176
    RRM2_PTBP1_like; RNA recognition motif 2 in polypyrimidine tract-binding protein 1 (PTB or hnRNP I) and similar proteins
    cd12695
    Location:264 → 356
    RRM3_PTBP1; RNA recognition motif 3 in vertebrate polypyrimidine tract-binding protein 1 (PTB)
    TIGR01649
    Location:1 → 457
    hnRNP-L_PTB; hnRNP-L/PTB/hephaestus splicing factor family
    cl17169
    Location:377 → 457
    RRM_SF; RNA recognition motif (RRM) superfamily
Nucleotide Protein
Heading Accession and Version

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