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DICER1 dicer 1, ribonuclease III [ Python bivittatus (Burmese python) ]

Gene ID: 103065054, updated on 11-Mar-2024

Summary

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Gene symbol
DICER1
Gene description
dicer 1, ribonuclease III
Gene type
protein coding
RefSeq status
MODEL
Organism
Python bivittatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Henophidia; Pythonidae; Python
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: Un
Exon count:
30
Annotation release Status Assembly Chr Location
102 current Python_molurus_bivittatus-5.0.2 (GCF_000186305.1) Unplaced Scaffold NW_006532207.1 (318402..377128)

NW_006532207.1Genomic Context describing neighboring genes Neighboring gene spectrin repeat containing nuclear envelope family member 3 Neighboring gene calmin Neighboring gene goosecoid homeobox

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006532207 Unplaced Scaffold Reference Python_molurus_bivittatus-5.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables deoxyribonuclease I activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ribonuclease III activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in apoptotic DNA fragmentation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in pre-miRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in siRNA processing IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of RISC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
endoribonuclease Dicer
Names
dicer 1, ribonuclease type III

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Python bivittatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Python_molurus_bivittatus-5.0.2 Primary Assembly

Genomic

  1. NW_006532207.1 Reference Python_molurus_bivittatus-5.0.2 Primary Assembly

    Range
    318402..377128
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_025177669.1 → XP_025033437.1  endoribonuclease Dicer

    UniProtKB/TrEMBL
    A0A9F5JDI6
    Conserved Domains (5) summary
    smart00535
    Location:1285 → 1376
    RIBOc; Ribonuclease III family
    COG0571
    Location:1653 → 1905
    Rnc; dsRNA-specific ribonuclease [Transcription]
    cd02843
    Location:877 → 998
    PAZ_dicer_like; PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named ...
    pfam03368
    Location:620 → 708
    Dicer_dimer; Dicer dimerisation domain
    cl17041
    Location:27 → 600
    helicase_insert_domain; helicase_insert_domain

  2. XM_007422404.3 → XP_007422466.2  endoribonuclease Dicer

    UniProtKB/TrEMBL
    A0A9F5JDI6
    Conserved Domains (5) summary
    smart00535
    Location:1285 → 1376
    RIBOc; Ribonuclease III family
    COG0571
    Location:1653 → 1905
    Rnc; dsRNA-specific ribonuclease [Transcription]
    cd02843
    Location:877 → 998
    PAZ_dicer_like; PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named ...
    pfam03368
    Location:620 → 708
    Dicer_dimer; Dicer dimerisation domain
    cl17041
    Location:27 → 600
    helicase_insert_domain; helicase_insert_domain

  3. XM_025177671.1 → XP_025033439.1  endoribonuclease Dicer

    UniProtKB/TrEMBL
    A0A9F5JDI6
    Conserved Domains (5) summary
    smart00535
    Location:1285 → 1376
    RIBOc; Ribonuclease III family
    COG0571
    Location:1653 → 1905
    Rnc; dsRNA-specific ribonuclease [Transcription]
    cd02843
    Location:877 → 998
    PAZ_dicer_like; PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named ...
    pfam03368
    Location:620 → 708
    Dicer_dimer; Dicer dimerisation domain
    cl17041
    Location:27 → 600
    helicase_insert_domain; helicase_insert_domain

  4. XM_025177672.1 → XP_025033440.1  endoribonuclease Dicer

    UniProtKB/TrEMBL
    A0A9F5JDI6
    Conserved Domains (5) summary
    smart00535
    Location:1285 → 1376
    RIBOc; Ribonuclease III family
    COG0571
    Location:1653 → 1905
    Rnc; dsRNA-specific ribonuclease [Transcription]
    cd02843
    Location:877 → 998
    PAZ_dicer_like; PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named ...
    pfam03368
    Location:620 → 708
    Dicer_dimer; Dicer dimerisation domain
    cl17041
    Location:27 → 600
    helicase_insert_domain; helicase_insert_domain

  5. XM_025177670.1 → XP_025033438.1  endoribonuclease Dicer

    UniProtKB/TrEMBL
    A0A9F5JDI6
    Conserved Domains (5) summary
    smart00535
    Location:1285 → 1376
    RIBOc; Ribonuclease III family
    COG0571
    Location:1653 → 1905
    Rnc; dsRNA-specific ribonuclease [Transcription]
    cd02843
    Location:877 → 998
    PAZ_dicer_like; PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named ...
    pfam03368
    Location:620 → 708
    Dicer_dimer; Dicer dimerisation domain
    cl17041
    Location:27 → 600
    helicase_insert_domain; helicase_insert_domain
Nucleotide Protein
Heading Accession and Version

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