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USH2A usherin [ Python bivittatus (Burmese python) ]

Gene ID: 103048196, updated on 11-Mar-2024

Summary

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Gene symbol
USH2A
Gene description
usherin
Gene type
protein coding
RefSeq status
MODEL
Organism
Python bivittatus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Lepidosauria; Squamata; Bifurcata; Unidentata; Episquamata; Toxicofera; Serpentes; Henophidia; Pythonidae; Python
Orthologs
human mouse all
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Genomic context

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See USH2A in Genome Data Viewer
Location:
chromosome: Un
Exon count:
71
Annotation release Status Assembly Chr Location
102 current Python_molurus_bivittatus-5.0.2 (GCF_000186305.1) Unplaced Scaffold NW_006532024.1 (495030..995708)

NW_006532024.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC112543287 Neighboring gene U6 spliceosomal RNA Neighboring gene estrogen related receptor gamma Neighboring gene potassium channel tetramerization domain containing 3

Genomic regions, transcripts, and products

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Genomic Sequence:
NW_006532024 Unplaced Scaffold Reference Python_molurus_bivittatus-5.0.2 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cytokine receptor activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
LOW QUALITY PROTEIN: usherin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Python bivittatus Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Python_molurus_bivittatus-5.0.2 Primary Assembly

Genomic

  1. NW_006532024.1 Reference Python_molurus_bivittatus-5.0.2 Primary Assembly

    Range
    495030..995708
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007420058.1 → XP_007420120.1  LOW QUALITY PROTEIN: usherin

    UniProtKB/TrEMBL
    A0A9F2Q2K2
    Conserved Domains (7) summary
    smart00560
    Location:145 → 282
    LamGL; LamG-like jellyroll fold domain
    cd00055
    Location:898 → 947
    EGF_Lam; Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in ...
    cd00063
    Location:3919 → 4015
    FN3; Fibronectin type 3 domain; One of three types of internal repeats found in the plasma protein fibronectin. Its tenth fibronectin type III repeat contains an RGD cell recognition sequence in a flexible loop between 2 strands. Approximately 2% of all ...
    cd00110
    Location:1515 → 1672
    LamG; Laminin G domain; Laminin G-like domains are usually Ca++ mediated receptors that can have binding sites for steroids, beta1 integrins, heparin, sulfatides, fibulin-1, and alpha-dystroglycans. Proteins that contain LamG domains serve a variety of ...
    pfam00041
    Location:2433 → 2514
    fn3; Fibronectin type III domain
    pfam00053
    Location:846 → 896
    Laminin_EGF; Laminin EGF domain
    cl02806
    Location:294 → 515
    Laminin_N; Laminin N-terminal (Domain VI)
Nucleotide Protein
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