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smpdl3a sphingomyelin phosphodiesterase acid like 3A [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103046912, updated on 3-Apr-2024

Summary

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Gene symbol
smpdl3a
Gene description
sphingomyelin phosphodiesterase acid like 3A
See related
EnsemblRapid:ENSAMXG00025007616
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 1
Exon count:
8
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 1 NC_064408.1 (82111375..82120881)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 3 NC_035899.1 (35377587..35391434, complement)

Chromosome 1 - NC_064408.1Genomic Context describing neighboring genes Neighboring gene protein kinase (cAMP-dependent, catalytic) inhibitor beta Neighboring gene fatty acid binding protein 7, brain, b Neighboring gene clavesin 2 Neighboring gene uncharacterized LOC125799068

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sphingomyelin phosphodiesterase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in sphingomyelin catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
acid sphingomyelinase-like phosphodiesterase 3a

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064408.1 Reference AstMex3_surface

    Range
    82111375..82120881
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007255396.4 → XP_007255458.3  acid sphingomyelinase-like phosphodiesterase 3a

    UniProtKB/TrEMBL
    A0A8B9RGR9
    Related
    ENSAMXP00025009673.1, ENSAMXT00025013961.1
Nucleotide Protein
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