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ncam1a neural cell adhesion molecule 1a [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103042174, updated on 11-Mar-2024

Summary

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Gene symbol
ncam1a
Gene description
neural cell adhesion molecule 1a
See related
EnsemblRapid:ENSAMXG00025022570
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Also known as
ncam1
Orthologs
zebrafish all
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Genomic context

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Location:
chromosome: 17
Exon count:
22
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 17 NC_064424.1 (7545738..7974262, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 14 NC_035910.1 (3434141..3872172, complement)

Chromosome 17 - NC_064424.1Genomic Context describing neighboring genes Neighboring gene zinc finger and BTB domain containing 16a Neighboring gene 5-hydroxytryptamine (serotonin) receptor 3A Neighboring gene cell adhesion molecule 1a Neighboring gene uncharacterized LOC125782444

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in axon guidance IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in cell adhesion IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in neuron projection IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
neural cell adhesion molecule 1a
Names
neural cell adhesion molecule 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064424.1 Reference AstMex3_surface

    Range
    7545738..7974262 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049466496.1 → XP_049322453.1  neural cell adhesion molecule 1a isoform X2

  2. XM_049466503.1 → XP_049322460.1  neural cell adhesion molecule 1a isoform X10

  3. XM_049466495.1 → XP_049322452.1  neural cell adhesion molecule 1a isoform X1

  4. XM_049466504.1 → XP_049322461.1  neural cell adhesion molecule 1a isoform X11

    Related
    ENSAMXP00025038304.1, ENSAMXT00025049800.1

  5. XM_049466497.1 → XP_049322454.1  neural cell adhesion molecule 1a isoform X3

  6. XM_049466498.1 → XP_049322455.1  neural cell adhesion molecule 1a isoform X4

  7. XM_049466499.1 → XP_049322456.1  neural cell adhesion molecule 1a isoform X5

  8. XM_049466500.1 → XP_049322457.1  neural cell adhesion molecule 1a isoform X6

  9. XM_022676026.2 → XP_022531747.2  neural cell adhesion molecule 1a isoform X7

    Related
    ENSAMXP00025038491.1, ENSAMXT00025049987.1

  10. XM_049466501.1 → XP_049322458.1  neural cell adhesion molecule 1a isoform X8

  11. XM_049466502.1 → XP_049322459.1  neural cell adhesion molecule 1a isoform X9

Nucleotide Protein
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