U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

bcat1 branched chain amino-acid transaminase 1, cytosolic [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103039877, updated on 11-Apr-2024

Summary

Go to the top of the page Help
Gene symbol
bcat1
Gene description
branched chain amino-acid transaminase 1, cytosolic
See related
EnsemblRapid:ENSAMXG00025039314
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: 2
Exon count:
12
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 2 NC_064409.1 (2530352..2566596, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 7 NC_035903.1 (34691772..34721618, complement)

Chromosome 2 - NC_064409.1Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC111193020 Neighboring gene ethanolamine kinase 1 Neighboring gene SRY-box transcription factor 5 Neighboring gene lymphoid-restricted membrane protein Neighboring gene dynein axonemal intermediate chain 7

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables branched-chain-amino-acid transaminase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in L-leucine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in valine biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in mitochondrion IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
branched-chain-amino-acid aminotransferase, cytosolic
Names
branched chain amino acid transaminase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064409.1 Reference AstMex3_surface

    Range
    2530352..2566596 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022671759.2 → XP_022527480.1  branched-chain-amino-acid aminotransferase, cytosolic isoform X1

    UniProtKB/TrEMBL
    A0A3B1IQP2, A0A8T2ME34
    Related
    ENSAMXP00025068821.1, ENSAMXT00025087792.1
    Conserved Domains (1) summary
    cl25388
    Location:36 → 388
    PRK13357; branched-chain amino acid aminotransferase; Provisional

  2. XM_022671761.2 → XP_022527482.1  branched-chain-amino-acid aminotransferase, cytosolic isoform X2

    UniProtKB/TrEMBL
    A0A3B1IER5, A0A8T2ME34
    Related
    ENSAMXP00025068879.1, ENSAMXT00025087850.1
    Conserved Domains (1) summary
    cl25388
    Location:21 → 373
    PRK13357; branched-chain amino acid aminotransferase; Provisional
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.