U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

acsl1a acyl-CoA synthetase long chain family member 1a [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103038692, updated on 11-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
acsl1a
Gene description
acyl-CoA synthetase long chain family member 1a
See related
EnsemblRapid:ENSAMXG00025023456
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Also known as
acsl1
Orthologs
human zebrafish all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
See acsl1a in Genome Data Viewer
Location:
chromosome: 25
Exon count:
23
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 25 NC_064432.1 (4351420..4385111)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 21 NC_035917.1 (3399191..3437044)

Chromosome 25 - NC_064432.1Genomic Context describing neighboring genes Neighboring gene EF-hand calcium-binding domain-containing protein 6 Neighboring gene helt bHLH transcription factor Neighboring gene caspase 3, apoptosis-related cysteine peptidase a Neighboring gene uncharacterized LOC125787864

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables arachidonate-CoA ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in long-chain fatty-acyl-CoA biosynthetic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in very long-chain fatty acid metabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in endoplasmic reticulum IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
long-chain-fatty-acid--CoA ligase 1a
Names
acyl-CoA synthetase long-chain family member 1
long-chain-fatty-acid--CoA ligase 1

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064432.1 Reference AstMex3_surface

    Range
    4351420..4385111
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_015601168.3 → XP_015456654.3  long-chain-fatty-acid--CoA ligase 1a isoform X2

    Related
    ENSAMXP00025039058.1, ENSAMXT00025050555.1

  2. XM_022681677.2 → XP_022537398.2  long-chain-fatty-acid--CoA ligase 1a isoform X1

  3. XM_015601169.3 → XP_015456655.3  long-chain-fatty-acid--CoA ligase 1a isoform X3

    Related
    ENSAMXP00025039074.1, ENSAMXT00025050571.1

  4. XM_022681678.2 → XP_022537399.2  long-chain-fatty-acid--CoA ligase 1a isoform X1

    Related
    ENSAMXP00025038895.1, ENSAMXT00025050392.1
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.