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sec22a SEC22 homolog A, vesicle trafficking protein [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103031923, updated on 11-Mar-2024

Summary

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Gene symbol
sec22a
Gene description
SEC22 homolog A, vesicle trafficking protein
See related
EnsemblRapid:ENSAMXG00025042494
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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See sec22a in Genome Data Viewer
Location:
chromosome: 11
Exon count:
7
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 11 NC_064418.1 (8426594..8439887, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 19 NC_035915.1 (29823614..29836888)

Chromosome 11 - NC_064418.1Genomic Context describing neighboring genes Neighboring gene 3-hydroxyacyl-CoA dehydratase 2 Neighboring gene adenylate cyclase 5 Neighboring gene protein disulfide isomerase family A, member 5 Neighboring gene sema domain, seven thrombospondin repeats (type 1 and type 1-like), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 5Ba

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in endoplasmic reticulum to Golgi vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle-trafficking protein SEC22a
Names
SEC22 vesicle trafficking protein homolog A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064418.1 Reference AstMex3_surface

    Range
    8426594..8439887 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007227919.4 → XP_007227981.2  vesicle-trafficking protein SEC22a

    UniProtKB/TrEMBL
    A0A8T2LI09
    Related
    ENSAMXP00025072049.1, ENSAMXT00025093407.1
    Conserved Domains (1) summary
    pfam13774
    Location:38 → 114
    Longin; Regulated-SNARE-like domain
Nucleotide Protein
Heading Accession and Version

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