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brcc3 BRCA1/BRCA2-containing complex, subunit 3 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103031186, updated on 3-Apr-2024

Summary

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Gene symbol
brcc3
Gene description
BRCA1/BRCA2-containing complex, subunit 3
See related
EnsemblRapid:ENSAMXG00025039236
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 17
Exon count:
8
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 17 NC_064424.1 (19802511..19811978, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 14 NC_035910.1 (15086728..15096213)

Chromosome 17 - NC_064424.1Genomic Context describing neighboring genes Neighboring gene gamma-aminobutyric acid type A receptor subunit beta4 Neighboring gene gamma-aminobutyric acid receptor subunit alpha-3 Neighboring gene fun14 domain containing 2 Neighboring gene C-x(9)-C motif containing 4 homolog (S. cerevisiae)

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables cysteine-type deubiquitinase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables metallopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables polyubiquitin modification-dependent protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in double-strand break repair IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of BRCA1-A complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of BRISC complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lys-63-specific deubiquitinase BRCC36

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064424.1 Reference AstMex3_surface

    Range
    19802511..19811978 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_049466437.1 → XP_049322394.1  lys-63-specific deubiquitinase BRCC36

    UniProtKB/TrEMBL
    A0A3B1JQJ3, A0A8B9L617
    Related
    ENSAMXP00025067793.1, ENSAMXT00025086423.1
Nucleotide Protein
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