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jmjd6 jumonji domain containing 6, arginine demethylase and lysine hydroxylase [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103029547, updated on 11-Mar-2024

Summary

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Gene symbol
jmjd6
Gene description
jumonji domain containing 6, arginine demethylase and lysine hydroxylase
See related
EnsemblRapid:ENSAMXG00025008953
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 19
Exon count:
6
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 19 NC_064426.1 (11468775..11483055, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) Unplaced Scaffold NW_019172856.1 (369188..383071)

Chromosome 19 - NC_064426.1Genomic Context describing neighboring genes Neighboring gene ST6 (alpha-N-acetyl-neuraminyl-2,3-beta-galactosyl-1,3)-N-acetylgalactosaminide alpha-2,6-sialyltransferase 2 Neighboring gene FILIA-N KH-like domain-containing protein Neighboring gene methyltransferase 23, arginine Neighboring gene major facilitator superfamily domain containing 11

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables P-TEFb complex binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone H4R3 demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in phagocytosis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
bifunctional arginine demethylase and lysyl-hydroxylase JMJD6
Names
arginine demethylase and lysine hydroxylase

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064426.1 Reference AstMex3_surface

    Range
    11468775..11483055 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022666230.2 → XP_022521951.1  bifunctional arginine demethylase and lysyl-hydroxylase JMJD6

    UniProtKB/TrEMBL
    A0A8T2L1Q1, W5KGU9
    Related
    ENSAMXP00025012368.1, ENSAMXT00025017058.1
    Conserved Domains (1) summary
    pfam02373
    Location:174 → 288
    JmjC; JmjC domain, hydroxylase
Nucleotide Protein
Heading Accession and Version

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