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pir pirin [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103025957, updated on 11-Mar-2024

Summary

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Gene symbol
pir
Gene description
pirin
See related
EnsemblRapid:ENSAMXG00025031808
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 23
Exon count:
10
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 23 NC_064430.1 (16715930..16741368, complement)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) Unplaced Scaffold NW_019172925.1 (3711809..3740504, complement)

Chromosome 23 - NC_064430.1Genomic Context describing neighboring genes Neighboring gene gastrin-releasing peptide receptor Neighboring gene TOG array regulator of axonemal microtubules protein 1-like Neighboring gene vascular endothelial growth factor D Neighboring gene uncharacterized LOC103025655 Neighboring gene cytoplasmic tyrosine-protein kinase BMX

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables quercetin 2,3-dioxygenase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in monocyte differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
pirin
Names
pirin (iron-binding nuclear protein)

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064430.1 Reference AstMex3_surface

    Range
    16715930..16741368 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022668168.2 → XP_022523889.2  pirin isoform X1

    Related
    ENSAMXP00025051766.1, ENSAMXT00025066773.1

  2. XM_022668169.2 → XP_022523890.2  pirin isoform X2

Nucleotide Protein
Heading Accession and Version

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