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ythdf2 YTH N6-methyladenosine RNA binding protein F2 [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103025866, updated on 11-Mar-2024

Summary

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Gene symbol
ythdf2
Gene description
YTH N6-methyladenosine RNA binding protein F2
See related
EnsemblRapid:ENSAMXG00025015614
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
zebrafish all
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Genomic context

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See ythdf2 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
6
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 14 NC_064421.1 (34551892..34569642)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 9 NC_035905.1 (10205135..10222403, complement)

Chromosome 14 - NC_064421.1Genomic Context describing neighboring genes Neighboring gene procathepsin L Neighboring gene vestigial-like family member 2b Neighboring gene methionine sulfoxide reductase Ab Neighboring gene mucin-2-like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables N6-methyladenosine-containing RNA reader activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in mRNA destabilization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
YTH domain-containing family protein 2
Names
YTH N(6)-methyladenosine RNA binding protein 2
YTH N6-methyladenosine RNA binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064421.1 Reference AstMex3_surface

    Range
    34551892..34569642
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_022672687.2 → XP_022528408.1  YTH domain-containing family protein 2

    UniProtKB/TrEMBL
    A0A3B1JE56, A0A3B1KA33, A0A8B9HBD3, A0A8B9HDS3
    Related
    ENSAMXP00025018456.1, ENSAMXT00025027726.1
    Conserved Domains (2) summary
    pfam04146
    Location:425 → 558
    YTH; YT521-B-like domain
    cl25764
    Location:277 → 403
    PAT1; Topoisomerase II-associated protein PAT1
Nucleotide Protein
Heading Accession and Version

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