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ptpra protein tyrosine phosphatase receptor type A [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103023538, updated on 3-Apr-2024

Summary

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Gene symbol
ptpra
Gene description
protein tyrosine phosphatase receptor type A
See related
EnsemblRapid:ENSAMXG00025039257
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 17
Exon count:
23
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 17 NC_064424.1 (27598081..27656075)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 14 NC_035910.1 (25315092..25364016, complement)

Chromosome 17 - NC_064424.1Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase theta-1 Neighboring gene isocitrate dehydrogenase (NAD(+)) 3 non-catalytic subunit beta Neighboring gene gonadotropin-releasing hormone 2 Neighboring gene glucosaminyl (N-acetyl) transferase 4b, tandem duplicate 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein tyrosine phosphatase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein dephosphorylation IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
receptor-type tyrosine-protein phosphatase alpha

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064424.1 Reference AstMex3_surface

    Range
    27598081..27656075
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007256538.4 → XP_007256600.3  receptor-type tyrosine-protein phosphatase alpha

    UniProtKB/TrEMBL
    A0A8B9L6N1
    Related
    ENSAMXP00025068191.1, ENSAMXT00025086821.1
Nucleotide Protein
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