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sostdc1a sclerostin domain containing 1a [ Astyanax mexicanus (Mexican tetra) ]

Gene ID: 103023400, updated on 11-Mar-2024

Summary

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Gene symbol
sostdc1a
Gene description
sclerostin domain containing 1a
See related
EnsemblRapid:ENSAMXG00025025625
Gene type
protein coding
RefSeq status
MODEL
Organism
Astyanax mexicanus
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Characiformes; Characoidei; Characidae; Astyanax
Also known as
sostdc1
Orthologs
human zebrafish all
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Genomic context

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Location:
chromosome: 18
Exon count:
2
Annotation release Status Assembly Chr Location
103 current AstMex3_surface (GCF_023375975.1) 18 NC_064425.1 (25426590..25430762)
102 previous assembly Astyanax_mexicanus-2.0 (GCF_000372685.2) 1 NC_035897.1 (11314972..11319136)

Chromosome 18 - NC_064425.1Genomic Context describing neighboring genes Neighboring gene leucine-rich repeat-containing protein 72 Neighboring gene ankyrin repeat and MYND domain containing 2a Neighboring gene CDP-L-ribitol pyrophosphorylase A Neighboring gene mesenchyme homeobox 2a

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables BMP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in negative regulation of BMP signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of Wnt signaling pathway IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
sclerostin domain-containing protein 1a
Names
sclerostin domain containing 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Astyanax mexicanus Annotation Release 103 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference AstMex3_surface

Genomic

  1. NC_064425.1 Reference AstMex3_surface

    Range
    25426590..25430762
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007232335.3 → XP_007232397.1  sclerostin domain-containing protein 1a

    UniProtKB/TrEMBL
    A0A3B1JMP1, A0A8B9K5N5
    Related
    ENSAMXP00025041643.1, ENSAMXT00025053245.1
    Conserved Domains (1) summary
    cl21545
    Location:8 → 217
    GHB_like; Glycoprotein hormone beta chain homologues
Nucleotide Protein
Heading Accession and Version

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