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SF3B1 splicing factor 3b subunit 1 [ Balaenoptera acutorostrata (minke whale) ]

Gene ID: 103015163, updated on 11-Mar-2024

Summary

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Gene symbol
SF3B1
Gene description
splicing factor 3b subunit 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Balaenoptera acutorostrata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 8
Exon count:
29
Annotation release Status Assembly Chr Location
RS_2023_06 current mBalAcu1.1 (GCF_949987535.1) 8 NC_080071.1 (56346126..56406273, complement)
101 previous assembly BalAcu1.0 (GCF_000493695.1) Unplaced Scaffold NW_006730678.1 (1987235..2025523, complement)

Chromosome 8 - NC_080071.1Genomic Context describing neighboring genes Neighboring gene ankyrin repeat domain 44 Neighboring gene 40S ribosomal protein S12-like Neighboring gene eukaryotic peptide chain release factor subunit 1-like Neighboring gene coenzyme Q10B Neighboring gene heat shock protein family D (Hsp60) member 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables mRNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in spliceosomal complex assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of U12-type spliceosomal complex IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2 snRNP IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of U2-type prespliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of catalytic step 2 spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
splicing factor 3B subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_949987535.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mBalAcu1.1

Genomic

  1. NC_080071.1 Reference mBalAcu1.1

    Range
    56346126..56406273 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007190463.3 → XP_007190525.1  splicing factor 3B subunit 1

    See identical proteins and their annotated locations for XP_007190525.1

    UniProtKB/TrEMBL
    A0A384AT13
    Conserved Domains (4) summary
    smart01104
    Location:241 → 382
    CTD; Spt5 C-terminal nonapeptide repeat binding Spt4
    COG5181
    Location:446 → 1304
    HSH155; U2 snRNP spliceosome subunit [RNA processing and modification]
    sd00044
    Location:850 → 874
    HEAT; HEAT repeat [structural motif]
    pfam08920
    Location:332 → 442
    SF3b1; Splicing factor 3B subunit 1

RNA

  1. XR_009008966.1 RNA Sequence

  2. XR_009008967.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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