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DDX17 DEAD-box helicase 17 [ Balaenoptera acutorostrata (minke whale) ]

Gene ID: 103009461, updated on 11-Mar-2024

Summary

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Gene symbol
DDX17
Gene description
DEAD-box helicase 17
Gene type
protein coding
RefSeq status
MODEL
Organism
Balaenoptera acutorostrata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
14
Annotation release Status Assembly Chr Location
RS_2023_06 current mBalAcu1.1 (GCF_949987535.1) 11 NC_080074.1 (10224855..10241102)
101 previous assembly BalAcu1.0 (GCF_000493695.1) Unplaced Scaffold NW_006729790.1 (1966247..1982470, complement)

Chromosome 11 - NC_080074.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORD58 Neighboring gene DNA meiotic recombinase 1 Neighboring gene small nucleolar RNA SNORA79 Neighboring gene KDEL endoplasmic reticulum protein retention receptor 3 Neighboring gene potassium inwardly rectifying channel subfamily J member 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA helicase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in alternative mRNA splicing, via spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of ribonucleoprotein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
probable ATP-dependent RNA helicase DDX17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_949987535.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mBalAcu1.1

Genomic

  1. NC_080074.1 Reference mBalAcu1.1

    Range
    10224855..10241102
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007189057.3 → XP_007189119.1  probable ATP-dependent RNA helicase DDX17 isoform X1

    UniProtKB/TrEMBL
    A0A384APM0
    Conserved Domains (4) summary
    smart00487
    Location:112 → 314
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:310 → 442
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:94 → 299
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam16210
    Location:513 → 593
    Keratin_2_tail; Keratin type II cytoskeletal 1 tail

  2. XM_007189058.3 → XP_007189120.1  probable ATP-dependent RNA helicase DDX17 isoform X2

    UniProtKB/TrEMBL
    A0A384AP51
    Conserved Domains (4) summary
    smart00487
    Location:112 → 314
    DEXDc; DEAD-like helicases superfamily
    cd00079
    Location:310 → 442
    HELICc; Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may ...
    cd00268
    Location:94 → 299
    DEADc; DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif ...
    pfam16210
    Location:511 → 591
    Keratin_2_tail; Keratin type II cytoskeletal 1 tail

  3. XM_057555947.1 → XP_057411930.1  probable ATP-dependent RNA helicase DDX17 isoform X3

Nucleotide Protein
Heading Accession and Version

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