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RNF13 ring finger protein 13 [ Balaenoptera acutorostrata (minke whale) ]

Gene ID: 103006718, updated on 11-Mar-2024

Summary

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Gene symbol
RNF13
Gene description
ring finger protein 13
Gene type
protein coding
RefSeq status
MODEL
Organism
Balaenoptera acutorostrata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 4
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_06 current mBalAcu1.1 (GCF_949987535.1) 4 NC_080067.1 (35138689..35320752)
101 previous assembly BalAcu1.0 (GCF_000493695.1) Unplaced Scaffold NW_006729123.1 (10233824..10382066)

Chromosome 4 - NC_080067.1Genomic Context describing neighboring genes Neighboring gene heterogeneous nuclear ribonucleoprotein K-like Neighboring gene uncharacterized LOC130708160 Neighboring gene COMM domain containing 2 Neighboring gene ankyrin repeat and ubiquitin domain containing 1 Neighboring gene U6 spliceosomal RNA Neighboring gene anaphase-promoting complex subunit 7-like Neighboring gene profilin 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF13

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_949987535.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mBalAcu1.1

Genomic

  1. NC_080067.1 Reference mBalAcu1.1

    Range
    35138689..35320752
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_057546016.1 → XP_057401999.1  E3 ubiquitin-protein ligase RNF13 isoform X1

    UniProtKB/TrEMBL
    A0A384ALH4

  2. XM_007188123.3 → XP_007188185.1  E3 ubiquitin-protein ligase RNF13 isoform X1

    UniProtKB/TrEMBL
    A0A384ALH4
    Conserved Domains (2) summary
    cd02123
    Location:23 → 180
    PA_C_RZF_like; PA_C-RZF_ like: Protease-associated (PA) domain C_RZF-like. This group includes various PA domain-containing proteins similar to C-RZF (chicken embryo RING zinc finger) protein. These proteins contain a C3H2C3 RING finger. C-RZF is expressed in embryo ...
    pfam13639
    Location:238 → 282
    zf-RING_2; Ring finger domain

  3. XM_028167971.2 → XP_028023772.1  E3 ubiquitin-protein ligase RNF13 isoform X2

    UniProtKB/TrEMBL
    A0A452CLA2
    Conserved Domains (2) summary
    cl28883
    Location:21 → 61
    PA; Protease-associated (PA) domain. The PA domain is an insert domain in a diverse fraction of proteases. The significance of the PA domain to many of the proteins in which it is inserted is undetermined. It may be a protein-protein interaction domain. At ...
    cl17238
    Location:119 → 164
    RING_Ubox; The superfamily of RING finger (Really Interesting New Gene) domain and U-box domain
Nucleotide Protein
Heading Accession and Version

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