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CFAP43 cilia and flagella associated protein 43 [ Balaenoptera acutorostrata (minke whale) ]

Gene ID: 103004474, updated on 3-Apr-2024

Summary

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Gene symbol
CFAP43
Gene description
cilia and flagella associated protein 43
Gene type
protein coding
RefSeq status
MODEL
Organism
Balaenoptera acutorostrata
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Mysticeti; Balaenopteridae; Balaenoptera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 16
Exon count:
38
Annotation release Status Assembly Chr Location
RS_2023_06 current mBalAcu1.1 (GCF_949987535.1) 16 NC_080079.1 (25413063..25517847)
101 previous assembly BalAcu1.0 (GCF_000493695.1) Unplaced Scaffold NW_006725776.1 (1192001..1297037)

Chromosome 16 - NC_080079.1Genomic Context describing neighboring genes Neighboring gene glutathione S-transferase omega-2 Neighboring gene uncharacterized LOC130705034 Neighboring gene glutathione S-transferase omega-1 Neighboring gene SWI5 dependent homologous recombination repair protein 1 Neighboring gene collagen type XVII alpha 1 chain

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cilium assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in sperm axoneme assembly IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in axoneme IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
cilia- and flagella-associated protein 43

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_949987535.1-RS_2023_06

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference mBalAcu1.1

Genomic

  1. NC_080079.1 Reference mBalAcu1.1

    Range
    25413063..25517847
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007172089.2 → XP_007172151.1  cilia- and flagella-associated protein 43 isoform X1

    UniProtKB/TrEMBL
    A0A383ZAU2, A0A383ZAU6
    Conserved Domains (5) summary
    COG1196
    Location:720 → 1535
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:316 → 504
    WD40; WD40 repeat [General function prediction only]
    pfam05565
    Location:742 → 832
    Sipho_Gp157; Siphovirus Gp157
    sd00039
    Location:352 → 387
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:316 → 453
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  2. XM_007172091.2 → XP_007172153.1  cilia- and flagella-associated protein 43 isoform X3

    UniProtKB/TrEMBL
    A0A383ZAA3, A0A383ZAU6
    Conserved Domains (5) summary
    COG2319
    Location:316 → 504
    WD40; WD40 repeat [General function prediction only]
    pfam02463
    Location:775 → 1616
    SMC_N; RecF/RecN/SMC N terminal domain
    pfam05565
    Location:742 → 832
    Sipho_Gp157; Siphovirus Gp157
    sd00039
    Location:352 → 387
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:316 → 453
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  3. XM_007172090.2 → XP_007172152.1  cilia- and flagella-associated protein 43 isoform X2

    UniProtKB/TrEMBL
    A0A383ZAQ7, A0A383ZAU6
    Conserved Domains (4) summary
    COG1196
    Location:719 → 1501
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:316 → 504
    WD40; WD40 repeat [General function prediction only]
    sd00039
    Location:352 → 387
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:316 → 453
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  4. XM_057531466.1 → XP_057387449.1  cilia- and flagella-associated protein 43 isoform X5

  5. XM_007172092.2 → XP_007172154.1  cilia- and flagella-associated protein 43 isoform X4

    UniProtKB/TrEMBL
    A0A383ZAU6, A0A383ZB75
    Conserved Domains (5) summary
    COG1196
    Location:670 → 1409
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:316 → 504
    WD40; WD40 repeat [General function prediction only]
    pfam05565
    Location:692 → 782
    Sipho_Gp157; Siphovirus Gp157
    sd00039
    Location:352 → 387
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:316 → 453
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

  6. XM_057531467.1 → XP_057387450.1  cilia- and flagella-associated protein 43 isoform X6

  7. XM_007172093.2 → XP_007172155.1  cilia- and flagella-associated protein 43 isoform X7

    UniProtKB/TrEMBL
    A0A383ZAG1, A0A383ZAU6
    Conserved Domains (5) summary
    COG1196
    Location:561 → 1300
    Smc; Chromosome segregation ATPase [Cell cycle control, cell division, chromosome partitioning]
    COG2319
    Location:157 → 345
    WD40; WD40 repeat [General function prediction only]
    pfam05565
    Location:583 → 673
    Sipho_Gp157; Siphovirus Gp157
    sd00039
    Location:193 → 228
    7WD40; WD40 repeat [structural motif]
    cl02567
    Location:157 → 294
    WD40; WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from ...

RNA

  1. XR_009005725.1 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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