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LOC102994007 E3 SUMO-protein ligase RanBP2 [ Physeter catodon (sperm whale) ]

Gene ID: 102994007, updated on 20-Nov-2023

Summary

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Gene symbol
LOC102994007
Gene description
E3 SUMO-protein ligase RanBP2
See related
Ensembl:ENSPCTG00005015604
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Also known as
RANBP2
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Genomic context

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Location:
chromosome: 12
Exon count:
30
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 12 NC_041225.1 (25193880..25242779, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 12 NC_041225.1 (25193218..25242779, complement)

Chromosome 12 - NC_041225.1Genomic Context describing neighboring genes Neighboring gene ectodysplasin A receptor Neighboring gene coiled-coil domain containing 138 Neighboring gene uncharacterized LOC129392627 Neighboring gene GRIP and coiled-coil domain containing 2

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTPase activator activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables peptidyl-prolyl cis-trans isomerase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in NLS-bearing protein import into nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein folding IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein peptidyl-prolyl isomerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of nuclear pore IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 SUMO-protein ligase RanBP2
Names
RAN binding protein 2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041225.1 Reference ASM283717v5 Primary Assembly

    Range
    25193880..25242779 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055089017.1 → XP_054944992.1  E3 SUMO-protein ligase RanBP2 isoform X4

    UniProtKB/TrEMBL
    A0A9W2X0T9

  2. XM_028497134.2 → XP_028352935.1  E3 SUMO-protein ligase RanBP2 isoform X2

    UniProtKB/TrEMBL
    A0A455BVC1
    Conserved Domains (11) summary
    COG0457
    Location:29 → 125
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    cd01926
    Location:2961 → 3119
    cyclophilin_ABH_like; Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding ...
    cd13177
    Location:1905 → 2021
    RanBD2_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 2
    cd13178
    Location:2825 → 2941
    RanBD4_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 4
    cd14684
    Location:1181 → 1297
    RanBD1_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 1
    cd14685
    Location:2202 → 2318
    RanBD3_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 3
    TIGR02917
    Location:1 → 204
    PEP_TPR_lipo; putative PEP-CTERM system TPR-repeat lipoprotein
    sd00025
    Location:1350 → 1370
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00006
    Location:58 → 88
    TPR; TPR repeat [structural motif]
    pfam00641
    Location:1592 → 1621
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam12185
    Location:2614 → 2672
    IR1-M; Nup358/RanBP2 E3 ligase domain

  3. XM_024116607.3 → XP_023972375.1  E3 SUMO-protein ligase RanBP2 isoform X3

    UniProtKB/TrEMBL
    A0A2Y9S809
    Related
    ENSPCTP00005022232.1, ENSPCTT00005024497.1
    Conserved Domains (10) summary
    COG0457
    Location:18 → 126
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    cd01926
    Location:2936 → 3094
    cyclophilin_ABH_like; Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding ...
    cd13177
    Location:1906 → 2022
    RanBD2_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 2
    cd13178
    Location:2800 → 2916
    RanBD4_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 4
    cd14684
    Location:1182 → 1298
    RanBD1_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 1
    cd14685
    Location:2203 → 2319
    RanBD3_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 3
    sd00025
    Location:1351 → 1371
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00006
    Location:59 → 89
    TPR; TPR repeat [structural motif]
    pfam00641
    Location:1593 → 1622
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam12185
    Location:2511 → 2572
    IR1-M; Nup358/RanBP2 E3 ligase domain

  4. XM_028497133.2 → XP_028352934.1  E3 SUMO-protein ligase RanBP2 isoform X1

    UniProtKB/TrEMBL
    A0A455BVC2
    Conserved Domains (10) summary
    COG0457
    Location:18 → 126
    TPR; Tetratricopeptide (TPR) repeat [General function prediction only]
    cd01926
    Location:2962 → 3120
    cyclophilin_ABH_like; Cyclophilin A, B and H-like cyclophilin-type peptidylprolyl cis- trans isomerase (PPIase) domain. This family represents the archetypal cystolic cyclophilin similar to human cyclophilins A, B and H. PPIase is an enzyme which accelerates protein folding ...
    cd13177
    Location:1906 → 2022
    RanBD2_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 2
    cd13178
    Location:2826 → 2942
    RanBD4_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 4
    cd14684
    Location:1182 → 1298
    RanBD1_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 1
    cd14685
    Location:2203 → 2319
    RanBD3_RanBP2-like; Ran-binding protein 2, Ran binding domain repeat 3
    sd00025
    Location:1351 → 1371
    zf-RanBP2; RanBP2-type Zn finger [structural motif]
    sd00006
    Location:59 → 89
    TPR; TPR repeat [structural motif]
    pfam00641
    Location:1593 → 1622
    zf-RanBP; Zn-finger in Ran binding protein and others
    pfam12185
    Location:2615 → 2673
    IR1-M; Nup358/RanBP2 E3 ligase domain
Nucleotide Protein
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