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UBE3C ubiquitin protein ligase E3C [ Physeter catodon (sperm whale) ]

Gene ID: 102991281, updated on 10-Mar-2024

Summary

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Gene symbol
UBE3C
Gene description
ubiquitin protein ligase E3C
See related
Ensembl:ENSPCTG00005007142
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 5
Exon count:
25
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 5 NC_041218.1 (1350061..1469349, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 5 NC_041218.1 (1350058..1469349, complement)

Chromosome 5 - NC_041218.1Genomic Context describing neighboring genes Neighboring gene protein tyrosine phosphatase receptor type N2 Neighboring gene histidine-rich glycoprotein-like Neighboring gene DnaJ heat shock protein family (Hsp40) member B6 Neighboring gene motor neuron and pancreas homeobox 1 Neighboring gene nucleolar protein with MIF4G domain 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in protein polyubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ubiquitin-protein ligase E3C

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041218.1 Reference ASM283717v5 Primary Assembly

    Range
    1350061..1469349 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024130940.3 → XP_023986708.1  ubiquitin-protein ligase E3C isoform X3

    UniProtKB/TrEMBL
    A0A2Y9T8U3
    Conserved Domains (2) summary
    smart00015
    Location:47 → 64
    IQ; Calmodulin-binding motif
    cd00078
    Location:697 → 1053
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  2. XM_028489506.2 → XP_028345307.1  ubiquitin-protein ligase E3C isoform X4

    UniProtKB/TrEMBL
    A0A455B941
    Conserved Domains (2) summary
    smart00015
    Location:47 → 64
    IQ; Calmodulin-binding motif
    cd00078
    Location:726 → 1019
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  3. XM_024130931.3 → XP_023986699.1  ubiquitin-protein ligase E3C isoform X2

    UniProtKB/TrEMBL
    A0A2Y9TF03
    Conserved Domains (2) summary
    smart00015
    Location:47 → 64
    IQ; Calmodulin-binding motif
    cd00078
    Location:725 → 1081
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  4. XM_024130928.3 → XP_023986696.1  ubiquitin-protein ligase E3C isoform X1

    UniProtKB/TrEMBL
    A0A2Y9T6Z4
    Related
    ENSPCTP00005010096.1, ENSPCTT00005011176.1
    Conserved Domains (2) summary
    smart00015
    Location:47 → 64
    IQ; Calmodulin-binding motif
    cd00078
    Location:726 → 1082
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  5. XM_024130945.3 → XP_023986713.1  ubiquitin-protein ligase E3C isoform X5

    UniProtKB/TrEMBL
    A0A2Y9T8U9
    Conserved Domains (1) summary
    cd00078
    Location:610 → 966
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...

  6. XM_028489507.1 → XP_028345308.1  ubiquitin-protein ligase E3C isoform X6

    UniProtKB/TrEMBL
    A0A455BBH7
    Conserved Domains (2) summary
    smart00015
    Location:47 → 64
    IQ; Calmodulin-binding motif
    cl27008
    Location:726 → 894
    HECTc; HECT domain; C-terminal catalytic domain of a subclass of Ubiquitin-protein ligase (E3). It binds specific ubiquitin-conjugating enzymes (E2), accepts ubiquitin from E2, transfers ubiquitin to substrate lysine side chains, and transfers additional ...
Nucleotide Protein
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