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RUNX3 RUNX family transcription factor 3 [ Physeter catodon (sperm whale) ]

Gene ID: 102991197, updated on 10-Mar-2024

Summary

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Gene symbol
RUNX3
Gene description
RUNX family transcription factor 3
See related
Ensembl:ENSPCTG00005006898
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 3
Exon count:
6
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 3 NC_041216.1 (15466916..15526494)
102 previous assembly ASM283717v2 (GCF_002837175.2) 3 NC_041216.1 (15466913..15527730)

Chromosome 3 - NC_041216.1Genomic Context describing neighboring genes Neighboring gene pre-mRNA-splicing factor SYF2 Neighboring gene U6 spliceosomal RNA Neighboring gene chloride intracellular channel 4 Neighboring gene serine and arginine repetitive matrix 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ATP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in hemopoiesis IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in neuron differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
runt-related transcription factor 3
Names
runt related transcription factor 3

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041216.1 Reference ASM283717v5 Primary Assembly

    Range
    15466916..15526494
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024125610.2 → XP_023981378.1  runt-related transcription factor 3 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9ST55
    Related
    ENSPCTP00005009722.1, ENSPCTT00005010733.1
    Conserved Domains (2) summary
    pfam00853
    Location:77 → 198
    Runt; Runt domain
    pfam08504
    Location:332 → 430
    RunxI; Runx inhibition domain

  2. XM_007128566.4 → XP_007128628.2  runt-related transcription factor 3 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9FT65
    Conserved Domains (2) summary
    pfam00853
    Location:63 → 184
    Runt; Runt domain
    pfam08504
    Location:318 → 416
    RunxI; Runx inhibition domain
Nucleotide Protein
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