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MMP17 matrix metallopeptidase 17 [ Physeter catodon (sperm whale) ]

Gene ID: 102990445, updated on 10-Mar-2024

Summary

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Gene symbol
MMP17
Gene description
matrix metallopeptidase 17
See related
Ensembl:ENSPCTG00005018940
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 19
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 19 NC_041232.1 (25075825..25105915)
102 previous assembly ASM283717v2 (GCF_002837175.2) 19 NC_041232.1 (25075886..25105915)

Chromosome 19 - NC_041232.1Genomic Context describing neighboring genes Neighboring gene splicing factor SWAP Neighboring gene uncharacterized LOC114484429 Neighboring gene uncharacterized LOC129391562 Neighboring gene unc-51 like autophagy activating kinase 1 Neighboring gene E1A binding protein p400 Neighboring gene small nucleolar RNA SNORA49

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables metalloendopeptidase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in collagen catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in extracellular matrix organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in proteolysis IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
matrix metalloproteinase-17

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041232.1 Reference ASM283717v5 Primary Assembly

    Range
    25075825..25105915
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_055080257.1 → XP_054936232.1  matrix metalloproteinase-17 isoform X1

    UniProtKB/TrEMBL
    A0A9W2WAP5

  2. XM_024120873.3 → XP_023976641.2  matrix metalloproteinase-17 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9SD91
    Related
    ENSPCTP00005026516.1, ENSPCTT00005029193.1
Nucleotide Protein
Heading Accession and Version

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