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VAMP5 vesicle associated membrane protein 5 [ Physeter catodon (sperm whale) ]

Gene ID: 102986406, updated on 10-Mar-2024

Summary

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Gene symbol
VAMP5
Gene description
vesicle associated membrane protein 5
See related
Ensembl:ENSPCTG00005021120
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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See VAMP5 in Genome Data Viewer
Location:
chromosome: Un
Exon count:
4
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) Unplaced Scaffold NW_021146130.1 (17628..25386, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) Unplaced Scaffold NW_021146130.1 (17645..25383, complement)

NW_021146130.1Genomic Context describing neighboring genes Neighboring gene transmembrane protein 150A Neighboring gene ring finger protein 181 Neighboring gene uncharacterized LOC114485241 Neighboring gene vesicle associated membrane protein 8

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Process Evidence Code Pubs
involved_in Golgi to plasma membrane protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in plasma membrane IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
vesicle-associated membrane protein 5

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NW_021146130.1 Reference ASM283717v5 Primary Assembly

    Range
    17628..25386 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028486352.2 → XP_028342153.1  vesicle-associated membrane protein 5 isoform X1

    UniProtKB/TrEMBL
    A0A455B231
    Conserved Domains (1) summary
    cd15872
    Location:11 → 76
    R-SNARE_VAMP5; SNARE motif of VAMP5

  2. XM_024129911.3 → XP_023985679.1  vesicle-associated membrane protein 5 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9TCA4
    Related
    ENSPCTP00005029528.1, ENSPCTT00005032470.1
    Conserved Domains (1) summary
    cd15872
    Location:5 → 70
    R-SNARE_VAMP5; SNARE motif of VAMP5
Nucleotide Protein
Heading Accession and Version

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