U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination

SMTNL2 smoothelin like 2 [ Physeter catodon (sperm whale) ]

Gene ID: 102986042, updated on 10-Mar-2024

Summary

Go to the top of the page Help
Gene symbol
SMTNL2
Gene description
smoothelin like 2
See related
Ensembl:ENSPCTG00005019314
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
NEW
Try the new Gene table
Try the new Transcript table

Genomic context

Go to the top of the page Help
Location:
chromosome: Un
Exon count:
9
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) Unplaced Scaffold NW_021145534.1 (10764..30189)
102 previous assembly ASM283717v2 (GCF_002837175.2) Unplaced Scaffold NW_021145534.1 (10764..30189)

NW_021145534.1Genomic Context describing neighboring genes Neighboring gene tektin 1

Genomic regions, transcripts, and products

Go to the top of the page Help

Go to nucleotide: Graphics FASTA GenBank

Bibliography

Go to the top of the pageHelp

GeneRIFs: Gene References Into Functions

General gene information

Go to the top of the page Help

Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein phosphatase 1 binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables tropomyosin binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in actin cytoskeleton organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of vasoconstriction IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in I band IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in M band IEA
Inferred from Electronic Annotation
more info
 PubMed 
part_of filamentous actin IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule organizing center IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

Go to the top of the page Help
Preferred Names
smoothelin-like protein 2

NCBI Reference Sequences (RefSeq)

Go to the top of the page Help

NEW Try the new Transcript table

RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NW_021145534.1 Reference ASM283717v5 Primary Assembly

    Range
    10764..30189
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028484832.2 → XP_028340633.1  smoothelin-like protein 2 isoform X3

    UniProtKB/TrEMBL
    A0A455AXL7
    Conserved Domains (1) summary
    pfam00307
    Location:207 → 312
    CH; Calponin homology (CH) domain

  2. XM_024128003.1 → XP_023983771.1  smoothelin-like protein 2 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9SYL8
    Related
    ENSPCTP00005027038.1, ENSPCTT00005029778.1
    Conserved Domains (3) summary
    pfam00307
    Location:349 → 454
    CH; Calponin homology (CH) domain
    cl01090
    Location:56 → 84
    SlyX
    cl28146
    Location:14 → 84
    PRK09039; hypothetical protein; Validated

  3. XM_028484831.2 → XP_028340632.1  smoothelin-like protein 2 isoform X2

    UniProtKB/TrEMBL
    A0A455AVQ1
    Conserved Domains (2) summary
    PRK09039
    Location:14 → 84
    PRK09039; hypothetical protein; Validated
    pfam00307
    Location:270 → 375
    CH; Calponin homology (CH) domain
Nucleotide Protein
Heading Accession and Version

Gene LinkOut

The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.