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STRBP spermatid perinuclear RNA binding protein [ Physeter catodon (sperm whale) ]

Gene ID: 102984676, updated on 10-Mar-2024

Summary

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Gene symbol
STRBP
Gene description
spermatid perinuclear RNA binding protein
See related
Ensembl:ENSPCTG00005014427
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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See STRBP in Genome Data Viewer
Location:
chromosome: 9
Exon count:
27
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 9 NC_041222.1 (3607592..3753670)
102 previous assembly ASM283717v2 (GCF_002837175.2) 9 NC_041222.1 (3607585..3753670)

Chromosome 9 - NC_041222.1Genomic Context describing neighboring genes Neighboring gene DENN domain containing 1A Neighboring gene mitochondrial fission regulator 1-like Neighboring gene crumbs cell polarity complex component 2 Neighboring gene uncharacterized LOC129392395 Neighboring gene uncharacterized LOC114486915 Neighboring gene COP9 signalosome complex subunit 2-like Neighboring gene RAB GTPase activating protein 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables double-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables single-stranded RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of precatalytic spliceosome IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
spermatid perinuclear RNA-binding protein

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041222.1 Reference ASM283717v5 Primary Assembly

    Range
    3607592..3753670
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028493542.2 → XP_028349343.1  spermatid perinuclear RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A455BKR8
    Conserved Domains (3) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:389 → 452
    DSRM; Double-stranded RNA binding motif
    pfam17228
    Location:607 → 664
    SGP; Sulphur globule protein

  2. XM_028493541.2 → XP_028349342.1  spermatid perinuclear RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A455BKR8
    Conserved Domains (3) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:389 → 452
    DSRM; Double-stranded RNA binding motif
    pfam17228
    Location:607 → 664
    SGP; Sulphur globule protein

  3. XM_055086978.1 → XP_054942953.1  spermatid perinuclear RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A455BKR8

  4. XM_028493540.2 → XP_028349341.1  spermatid perinuclear RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A455BKR8
    Conserved Domains (3) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:389 → 452
    DSRM; Double-stranded RNA binding motif
    pfam17228
    Location:607 → 664
    SGP; Sulphur globule protein

  5. XM_028493545.2 → XP_028349346.1  spermatid perinuclear RNA-binding protein isoform X4

    UniProtKB/TrEMBL
    A0A455C029
    Conserved Domains (2) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:389 → 452
    DSRM; Double-stranded RNA binding motif

  6. XM_028493544.2 → XP_028349345.1  spermatid perinuclear RNA-binding protein isoform X3

    UniProtKB/TrEMBL
    A0A455BK42
    Conserved Domains (2) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:389 → 452
    DSRM; Double-stranded RNA binding motif

  7. XM_007128898.4 → XP_007128960.1  spermatid perinuclear RNA-binding protein isoform X2

    See identical proteins and their annotated locations for XP_007128960.1

    UniProtKB/TrEMBL
    A0A2Y9FR78
    Related
    ENSPCTP00005020237.1, ENSPCTT00005022292.1
    Conserved Domains (2) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:389 → 452
    DSRM; Double-stranded RNA binding motif

  8. XM_028493543.2 → XP_028349344.1  spermatid perinuclear RNA-binding protein isoform X1

    UniProtKB/TrEMBL
    A0A455BKR8
    Conserved Domains (3) summary
    smart00572
    Location:81 → 334
    DZF; domain in DSRM or ZnF_C2H2 domain containing proteins
    smart00358
    Location:389 → 452
    DSRM; Double-stranded RNA binding motif
    pfam17228
    Location:607 → 664
    SGP; Sulphur globule protein

  9. XM_028493546.2 → XP_028349347.1  spermatid perinuclear RNA-binding protein isoform X5

    UniProtKB/TrEMBL
    A0A455BKS3
    Conserved Domains (3) summary
    smart00358
    Location:217 → 280
    DSRM; Double-stranded RNA binding motif
    cl02675
    Location:6 → 162
    DZF; DZF domain
    pfam17228
    Location:435 → 492
    SGP; Sulphur globule protein

RNA

  1. XR_003681121.2 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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