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HNRNPD heterogeneous nuclear ribonucleoprotein D [ Physeter catodon (sperm whale) ]

Gene ID: 102978564, updated on 10-Mar-2024

Summary

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Gene symbol
HNRNPD
Gene description
heterogeneous nuclear ribonucleoprotein D
See related
Ensembl:ENSPCTG00005006976
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 7
Exon count:
10
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 7 NC_041220.1 (72328975..72346367, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 7 NC_041220.1 (72328975..72346441, complement)

Chromosome 7 - NC_041220.1Genomic Context describing neighboring genes Neighboring gene PHD finger-like domain-containing protein 5A Neighboring gene vesicle-associated membrane protein 8-like Neighboring gene uncharacterized LOC114486585 Neighboring gene 28S ribosomal protein S17, mitochondrial-like Neighboring gene heterogeneous nuclear ribonucleoprotein D like

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables RNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in regulation of gene expression IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
heterogeneous nuclear ribonucleoprotein D0

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041220.1 Reference ASM283717v5 Primary Assembly

    Range
    72328975..72346367 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007127568.3 → XP_007127630.2  heterogeneous nuclear ribonucleoprotein D0 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9FQH0
    Conserved Domains (3) summary
    cd12575
    Location:99 → 172
    RRM1_hnRNPD_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP D0, hnRNP A/B, hnRNP DL and similar proteins
    cd12583
    Location:183 → 257
    RRM2_hnRNPD; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
    pfam08143
    Location:60 → 78
    CBFNT; CBFNT (NUC161) domain

  2. XM_007127572.4 → XP_007127634.2  heterogeneous nuclear ribonucleoprotein D0 isoform X2

    UniProtKB/TrEMBL
    A0A2Y9FP26
    Related
    ENSPCTP00005009910.1, ENSPCTT00005010956.1
    Conserved Domains (3) summary
    cd12575
    Location:99 → 172
    RRM1_hnRNPD_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP D0, hnRNP A/B, hnRNP DL and similar proteins
    cd12583
    Location:183 → 257
    RRM2_hnRNPD; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
    pfam08143
    Location:60 → 78
    CBFNT; CBFNT (NUC161) domain

  3. XM_007127569.4 → XP_007127631.2  heterogeneous nuclear ribonucleoprotein D0 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9FQH0
    Related
    ENSPCTP00005009843.1, ENSPCTT00005010876.1
    Conserved Domains (3) summary
    cd12575
    Location:99 → 172
    RRM1_hnRNPD_like; RNA recognition motif 1 in heterogeneous nuclear ribonucleoprotein hnRNP D0, hnRNP A/B, hnRNP DL and similar proteins
    cd12583
    Location:183 → 257
    RRM2_hnRNPD; RNA recognition motif 2 in heterogeneous nuclear ribonucleoprotein D0 (hnRNP D0) and similar proteins
    pfam08143
    Location:60 → 78
    CBFNT; CBFNT (NUC161) domain
Nucleotide Protein
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