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SNAPC1 small nuclear RNA activating complex polypeptide 1 [ Physeter catodon (sperm whale) ]

Gene ID: 102978283, updated on 10-Mar-2024

Summary

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Gene symbol
SNAPC1
Gene description
small nuclear RNA activating complex polypeptide 1
See related
Ensembl:ENSPCTG00005007861
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
11
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 11 NC_041224.1 (143131861..143160583)
102 previous assembly ASM283717v2 (GCF_002837175.2) 11 NC_041224.1 (143131869..143158805)

Chromosome 11 - NC_041224.1Genomic Context describing neighboring genes Neighboring gene protein kinase C eta Neighboring gene 60S ribosomal protein L12-like Neighboring gene uncharacterized LOC129392560 Neighboring gene hypoxia inducible factor 1 subunit alpha Neighboring gene von Hippel-Lindau disease tumor suppressor-like Neighboring gene synaptotagmin 16

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in snRNA transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in snRNA transcription by RNA polymerase III IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
part_of snRNA-activating protein complex IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
snRNA-activating protein complex subunit 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041224.1 Reference ASM283717v5 Primary Assembly

    Range
    143131861..143160583
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_024118373.3 → XP_023974141.1  snRNA-activating protein complex subunit 1

    UniProtKB/TrEMBL
    A0A2Y9S6A8
    Related
    ENSPCTP00005011054.1, ENSPCTT00005012224.1
    Conserved Domains (1) summary
    pfam09808
    Location:7 → 191
    SNAPc_SNAP43; Small nuclear RNA activating complex (SNAPc), subunit SNAP43

RNA

  1. XR_002890993.3 RNA Sequence

Nucleotide Protein
Heading Accession and Version

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