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LINGO1 leucine rich repeat and Ig domain containing 1 [ Physeter catodon (sperm whale) ]

Gene ID: 102976994, updated on 10-Mar-2024

Summary

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Gene symbol
LINGO1
Gene description
leucine rich repeat and Ig domain containing 1
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: 11
Exon count:
3
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 11 NC_041224.1 (66959946..67039200)
102 previous assembly ASM283717v2 (GCF_002837175.2) 11 NC_041224.1 (66959946..67039200)

Chromosome 11 - NC_041224.1Genomic Context describing neighboring genes Neighboring gene U4 spliceosomal RNA Neighboring gene uncharacterized LOC114487062 Neighboring gene histone H1.0-like Neighboring gene high mobility group 20A Neighboring gene pseudopodium enriched atypical kinase 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables protein binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in extracellular matrix IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in extracellular space IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041224.1 Reference ASM283717v5 Primary Assembly

    Range
    66959946..67039200
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_007110808.3 → XP_007110870.1  leucine-rich repeat and immunoglobulin-like domain-containing nogo receptor-interacting protein 1

    Conserved Domains (4) summary
    TIGR00864
    Location:335 → 415
    PCC; polycystin cation channel protein
    COG4886
    Location:60 → 365
    LRR; Leucine-rich repeat (LRR) protein [Transcription]
    sd00033
    Location:67 → 90
    LRR_RI; leucine-rich repeat [structural motif]
    cl11960
    Location:433 → 508
    Ig; Immunoglobulin domain
Nucleotide Protein
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