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RNF6 ring finger protein 6 [ Physeter catodon (sperm whale) ]

Gene ID: 102976452, updated on 10-Mar-2024

Summary

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Gene symbol
RNF6
Gene description
ring finger protein 6
See related
Ensembl:ENSPCTG00005012717
Gene type
protein coding
RefSeq status
MODEL
Organism
Physeter catodon
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Whippomorpha; Cetacea; Odontoceti; Physeteridae; Physeter
Orthologs
human mouse all
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Genomic context

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See RNF6 in Genome Data Viewer
Location:
chromosome: 13
Exon count:
12
Annotation release Status Assembly Chr Location
RS_2023_04 current ASM283717v5 (GCF_002837175.3) 13 NC_041226.1 (4314785..4337053, complement)
102 previous assembly ASM283717v2 (GCF_002837175.2) 13 NC_041226.1 (4315511..4337053, complement)

Chromosome 13 - NC_041226.1Genomic Context describing neighboring genes Neighboring gene phospholipid-transporting ATPase IB-like Neighboring gene phospholipid-transporting ATPase IB-like Neighboring gene cyclin dependent kinase 8 Neighboring gene uncharacterized LOC114487504

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables ubiquitin protein ligase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in protein ubiquitination IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in ubiquitin-dependent protein catabolic process IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
E3 ubiquitin-protein ligase RNF6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: GCF_002837175.3-RS_2023_04

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM283717v5 Primary Assembly

Genomic

  1. NC_041226.1 Reference ASM283717v5 Primary Assembly

    Range
    4314785..4337053 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_028497599.2 → XP_028353400.1  E3 ubiquitin-protein ligase RNF6 isoform X2

    UniProtKB/TrEMBL
    A0A455BWM7

  2. XM_028497607.1 → XP_028353408.1  E3 ubiquitin-protein ligase RNF6 isoform X10

    UniProtKB/TrEMBL
    A0A455C087

  3. XM_028497608.2 → XP_028353409.1  E3 ubiquitin-protein ligase RNF6 isoform X11

    UniProtKB/TrEMBL
    A0A455BWN8

  4. XM_028497610.2 → XP_028353411.1  E3 ubiquitin-protein ligase RNF6 isoform X13

    UniProtKB/TrEMBL
    A0A455C9N3

  5. XM_028497602.2 → XP_028353403.1  E3 ubiquitin-protein ligase RNF6 isoform X5

    UniProtKB/TrEMBL
    A0A455C081

  6. XM_028497604.2 → XP_028353405.1  E3 ubiquitin-protein ligase RNF6 isoform X7

    UniProtKB/TrEMBL
    A0A455BWN2

  7. XM_028497605.2 → XP_028353406.1  E3 ubiquitin-protein ligase RNF6 isoform X8

    UniProtKB/TrEMBL
    A0A455C9N2

  8. XM_028497601.2 → XP_028353402.1  E3 ubiquitin-protein ligase RNF6 isoform X4

    UniProtKB/TrEMBL
    A0A455BXD3

  9. XM_028497600.2 → XP_028353401.1  E3 ubiquitin-protein ligase RNF6 isoform X3

    UniProtKB/TrEMBL
    A0A455C9N0

  10. XM_028497597.1 → XP_028353398.1  E3 ubiquitin-protein ligase RNF6 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9F5J6
    Conserved Domains (1) summary
    cd16673
    Location:612 → 656
    RING-H2_RNF6; RING finger, H2 subclass, found in E3 ubiquitin-protein ligase RNF6 and similar proteins

  11. XM_007115120.4 → XP_007115182.2  E3 ubiquitin-protein ligase RNF6 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9F5J6
    Conserved Domains (1) summary
    cd16673
    Location:612 → 656
    RING-H2_RNF6; RING finger, H2 subclass, found in E3 ubiquitin-protein ligase RNF6 and similar proteins

  12. XM_028497598.2 → XP_028353399.1  E3 ubiquitin-protein ligase RNF6 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9F5J6
    Conserved Domains (1) summary
    cd16673
    Location:612 → 656
    RING-H2_RNF6; RING finger, H2 subclass, found in E3 ubiquitin-protein ligase RNF6 and similar proteins

  13. XM_007115119.3 → XP_007115181.2  E3 ubiquitin-protein ligase RNF6 isoform X1

    UniProtKB/TrEMBL
    A0A2Y9F5J6
    Related
    ENSPCTP00005017846.1, ENSPCTT00005019675.1
    Conserved Domains (1) summary
    cd16673
    Location:612 → 656
    RING-H2_RNF6; RING finger, H2 subclass, found in E3 ubiquitin-protein ligase RNF6 and similar proteins

  14. XM_028497606.2 → XP_028353407.1  E3 ubiquitin-protein ligase RNF6 isoform X9

    UniProtKB/TrEMBL
    A0A455BXD9

  15. XM_028497603.2 → XP_028353404.1  E3 ubiquitin-protein ligase RNF6 isoform X6

    UniProtKB/TrEMBL
    A0A455BWN3

  16. XM_028497609.2 → XP_028353410.1  E3 ubiquitin-protein ligase RNF6 isoform X12

    UniProtKB/TrEMBL
    A0A455BWN7
Nucleotide Protein
Heading Accession and Version

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