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GATA6 GATA binding protein 6 [ Panthera tigris (tiger) ]

Gene ID: 102964001, updated on 10-Mar-2024

Summary

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Gene symbol
GATA6
Gene description
GATA binding protein 6
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: D3
Exon count:
8
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) D3 NC_056671.1 (44751382..44783504)

Chromosome D3 - NC_056671.1Genomic Context describing neighboring genes Neighboring gene small nucleolar RNA SNORA62/SNORA6 family Neighboring gene abhydrolase domain containing 3, phospholipase Neighboring gene MIB E3 ubiquitin protein ligase 1 Neighboring gene uncharacterized LOC122232709 Neighboring gene uncharacterized LOC122232708

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056671.1 Chromosome D3 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables zinc ion binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate commitment IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in epithelial cell differentiation IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in negative regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
transcription factor GATA-6

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056671.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    44751382..44783504
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042962249.1 → XP_042818183.1  transcription factor GATA-6 isoform X1

    Conserved Domains (3) summary
    COG5641
    Location:441 → 588
    GAT1; GATA Zn-finger-containing transcription factor [Transcription]
    cd00202
    Location:441 → 492
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
    pfam05349
    Location:148 → 375
    GATA-N; GATA-type transcription activator, N-terminal

  2. XM_042962250.1 → XP_042818184.1  transcription factor GATA-6 isoform X2

    Conserved Domains (1) summary
    cd00202
    Location:441 → 492
    ZnF_GATA; Zinc finger DNA binding domain; binds specifically to DNA consensus sequence [AT]GATA[AG] promoter elements; a subset of family members may also bind protein; zinc-finger consensus topology is C-X(2)-C-X(17)-C-X(2)-C
Nucleotide Protein
Heading Accession and Version

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