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KDM5A lysine demethylase 5A [ Panthera tigris (tiger) ]

Gene ID: 102962286, updated on 10-Mar-2024

Summary

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Gene symbol
KDM5A
Gene description
lysine demethylase 5A
See related
Ensembl:ENSPTIG00000006859
Gene type
protein coding
RefSeq status
MODEL
Organism
Panthera tigris
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Feliformia; Felidae; Pantherinae; Panthera
Orthologs
human mouse all
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Genomic context

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Location:
chromosome: B4
Exon count:
28
Annotation release Status Assembly Chr Location
102 current P.tigris_Pti1_mat1.1 (GCF_018350195.1) B4 NC_056666.1 (36992314..37086011)

Chromosome B4 - NC_056666.1Genomic Context describing neighboring genes Neighboring gene 60S ribosomal protein L23a-like Neighboring gene coiled-coil domain containing 77 Neighboring gene uncharacterized LOC122240274 Neighboring gene uncharacterized LOC122240275 Neighboring gene solute carrier family 6 member 13 Neighboring gene solute carrier family 6 member 12

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_056666.1 Chromosome B4 Reference P.tigris_Pti1_mat1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables histone demethylase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in chromatin remodeling IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
lysine-specific demethylase 5A

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Panthera tigris Annotation Release 102 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference P.tigris_Pti1_mat1.1 Primary Assembly

Genomic

  1. NC_056666.1 Reference P.tigris_Pti1_mat1.1 Primary Assembly

    Range
    36992314..37086011
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_042991539.1 → XP_042847473.1  lysine-specific demethylase 5A

    UniProtKB/TrEMBL
    A0A8C9J842
    Conserved Domains (8) summary
    smart00545
    Location:18 → 59
    JmjN; Small domain found in the jumonji family of transcription factors
    cd15602
    Location:295 → 343
    PHD1_KDM5A; PHD finger 1 found in Lysine-specific demethylase 5A (KDM5A)
    cd15606
    Location:1163 → 1215
    PHD2_KDM5A; PHD finger 2 found in Lysine-specific demethylase 5A (KDM5A)
    cd15686
    Location:1608 → 1659
    PHD3_KDM5A; PHD finger 3 found in Lysine-specific demethylase 5A (KDM5A)
    cd16873
    Location:84 → 175
    ARID_KDM5A; ARID/BRIGHT DNA binding domain of lysine-specific demethylase 5A (KDM5A)
    pfam02373
    Location:470 → 586
    JmjC; JmjC domain, hydroxylase
    pfam02928
    Location:676 → 728
    zf-C5HC2; C5HC2 zinc finger
    pfam08429
    Location:741 → 1070
    PLU-1; PLU-1-like protein
Nucleotide Protein
Heading Accession and Version

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